Browse Element(s) Details


Os.16934.1.S1_at

Description gb:AK105892.1
DB_XREF= gi:32991101
TID=Os.16934.1
CNT=31
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.16934 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-E09, full insert sequence.
FL= gb:AK105892.1 gb:AK061767.1 gb:AK099777.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3848010/11BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38430Os.47983.1.A1_at11/114+22629863..22632500Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g38440OsAffx.26373.1.S1_at7/114+22632513..22635029hypothetical protein
LOC_Os04g38450Os.10714.1.S1_s_at11/114+22636289..22641735gamma-glutamyltranspeptidase family protein, expressed
LOC_Os04g38460OsAffx.26375.1.S1_at11/114+22643782..22644345hypothetical protein
LOC_Os04g38470OsAffx.4014.1.S1_at11/114+22646912..22647586hypothetical protein
LOC_Os04g38480Os.16934.1.S1_at10/114+22648195..22653439BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os04g38490OsAffx.26376.1.S1_at11/114+22659900..22660804hypothetical protein
LOC_Os04g38500OsAffx.4015.1.S1_at11/114+22661715..22662312hypothetical protein
LOC_Os04g38510OsAffx.14191.1.S1_at11/114+22664388..22664913hypothetical protein
LOC_Os04g38520Os.15136.1.A1_s_at11/114+22671226..22673671expressed protein
LOC_Os04g38520Os.13740.1.A1_at11/114+22671226..22673671expressed protein
LOC_Os04g38530Os.20067.1.S1_at11/114+22674694..22679574Aldose 1-epimerase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0016049biological_processcell growth
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16934.1.S1_at--971--8031Chr04:22648820..22648844 (25 bp)
GGAGTCACTCATCCAGGTGGCTCTG
LOC_Os04g38480
Os.16934.1.S1_at--680--9331Chr04:22648633..22648657 (25 bp)
TCGACCTACAATCTCCGGGCAATGG
LOC_Os04g38480
Os.16934.1.S1_at--161--9271Chr04:22648539..22648563 (25 bp)
TCCTCGCCCTTGTTTGTGTATATGA
LOC_Os04g38480
Os.16934.1.S1_at--798--3891Chr04:22648457..22648481 (25 bp)
CTGGTGCCTCGGTAATTTTCAAGTA
LOC_Os04g38480
Os.16934.1.S1_at--340--10091Chr04:22648434..22648458 (25 bp)
TAGGCTCTGCACTTGGTTGTCGTTA
LOC_Os04g38480
Os.16934.1.S1_at--201--8471NONE
TGGCCGGGCGGAATTGCAACACATT
NONE
Os.16934.1.S1_at--661--2471Chr04:22648384..22648408 (25 bp)
AACACATTGTTGTGGCGGCTCTGCG
LOC_Os04g38480
Os.16934.1.S1_at--155--8331Chr04:22648368..22648392 (25 bp)
GGCTCTGCGTCTGTAATGGCTGAAC
LOC_Os04g38480
Os.16934.1.S1_at--1087--851Chr04:22648353..22648377 (25 bp)
ATGGCTGAACAACTGATGCCTCTCT
LOC_Os04g38480
Os.16934.1.S1_at--837--9512Chr11:18604806..18604894 (24 bp)
TCTCTCTCTGCTGTATTGTACGTAC
NONE
Os.16934.1.S1_at--799--7031Chr04:22648312..22648336 (25 bp)
GTACAACTCTCTCTTTTGACGGTGC
LOC_Os04g38480
Target Sequence 
GGAGTCACTCATCCAGGTGGCTCTGCTCTGCACGCAGGGCTCCCCGATGGACCGGCCCAAGATGTCGGAGGTGGTGAGGA
TGCTGGAGGGCGATGGCCTCGCGGAGCGGTGGGAGGAGTGGCAGAAGGTGGAGGTGGTCCGGCAGGAGGCGGAGCTGGCC
CCCCGCCACAACGACTGGATCGTCGACTCGACCTACAATCTCCGGGCAATGGAGCTGTCCGGCCCGAGGTAAAAGAAACG
AAAGACAAAATCACAAAGCATCCAACCTTTGCTCGACGGCTTCCTCGCCCTTGTTTGTGTATATGACAGACAGATCGATA
GCTGGCAAATCTGGAGGGAAAAATGGTTTACTTGTAACCCTCCCTGGTGCCTCGGTAATTTTCAAGTAGGCTCTGCACTT
GGTTGTCGTTAGAAATGCATGGCCGGGCGGAATTGCAACACATTGTTGTGGCGGCTCTGCGTCTGTAATGGCTGAACAAC
TGATGCCTCTCTCTCTGCTGTATTGTACGTACAACTCTCTCTTTTGACGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis