Browse Element(s) Details


OsAffx.4014.1.S1_at

Description tigr:9632.m03630
TID=OsAffx.4014.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3847011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38430Os.47983.1.A1_at11/114+22629863..22632500Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g38440OsAffx.26373.1.S1_at7/114+22632513..22635029hypothetical protein
LOC_Os04g38450Os.10714.1.S1_s_at11/114+22636289..22641735gamma-glutamyltranspeptidase family protein, expressed
LOC_Os04g38460OsAffx.26375.1.S1_at11/114+22643782..22644345hypothetical protein
LOC_Os04g38470OsAffx.4014.1.S1_at11/114+22646912..22647586hypothetical protein
LOC_Os04g38480Os.16934.1.S1_at10/114+22648195..22653439BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os04g38490OsAffx.26376.1.S1_at11/114+22659900..22660804hypothetical protein
LOC_Os04g38500OsAffx.4015.1.S1_at11/114+22661715..22662312hypothetical protein
LOC_Os04g38510OsAffx.14191.1.S1_at11/114+22664388..22664913hypothetical protein
LOC_Os04g38520Os.15136.1.A1_s_at11/114+22671226..22673671expressed protein
LOC_Os04g38520Os.13740.1.A1_at11/114+22671226..22673671expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4014.1.S1_at--976--10271Chr04:22646942..22646966 (25 bp)
TTTGCAGTGGTCGTGATGAGCTCGT
LOC_Os04g38470
OsAffx.4014.1.S1_at--45--6671Chr04:22646969..22646993 (25 bp)
GTTGCTGATGGCGTCAGGACGATAC
LOC_Os04g38470
OsAffx.4014.1.S1_at--1151--3851Chr04:22646973..22646996 (24 bp)
CTGATGGCGTCAGGACGATACCAGC
LOC_Os04g38470
OsAffx.4014.1.S1_at--1152--8671Chr04:22647238..22647262 (25 bp)
TGTGCAAGGTTCAGCCGGTGGCCTA
LOC_Os04g38470
OsAffx.4014.1.S1_at--357--2911Chr04:22647243..22647267 (25 bp)
AAGGTTCAGCCGGTGGCCTACACAA
LOC_Os04g38470
OsAffx.4014.1.S1_at--1116--8451Chr04:22647256..22647280 (25 bp)
TGGCCTACACAACGGCGGCACGGCT
LOC_Os04g38470
OsAffx.4014.1.S1_at--1108--3711Chr04:22647319..22647343 (25 bp)
CTACGACGACAGAGGCACCGGCGGC
LOC_Os04g38470
OsAffx.4014.1.S1_at--459--5771Chr04:22647352..22647376 (25 bp)
GACGTTCCAGGTGCAGCAGGGCGCA
LOC_Os04g38470
OsAffx.4014.1.S1_at--1014--1911Chr04:22647428..22647452 (25 bp)
ACGGGATCGCGGCTGCCGGACTGCA
LOC_Os04g38470
OsAffx.4014.1.S1_at--12--7291Chr04:22647478..22647502 (25 bp)
GTGCCGGCGCGTGATGGTGAGCCTC
LOC_Os04g38470
OsAffx.4014.1.S1_at--770--6251Chr04:22647490..22647514 (25 bp)
GATGGTGAGCCTCCGGTGCGCCGAG
LOC_Os04g38470
Target Sequence 
TTTGCAGTGGTCGTGATGAGCTCGTGCGTTGCTGATGGCGTCAGGACGATACCAGCAGGTGTGCAAGGTTCAGCCGGTGG
CCTACACAACGGCGGCACGGCTCCATCTGCTGCTGCTGCGAACGGGAGCACCACCACCGCCTACGACGACAGAGGCACCG
GCGGCCAGACGGCGACGTTCCAGGTGCAGCAGGGCGCACAGCCGGAGGAAGAGACGACGACGGAGATGGGCAACGCGGCG
GAGGCGGCGACGGGATCGCGGCTGCCGGACTGCACGCACGCGTGCGGGCCGTGCTCCCCGTGCCGGCGCGTGATGGTGAG
CCTCCGGTGCGCCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis