Browse Element(s) Details


Os.10714.1.S1_s_at

Description gb:AU075570
DB_XREF= gi:5455327
DB_XREF=AU075570
CLONE=C12057_14Z
TID=Os.10714.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10714 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein prf:2124427C (A.thaliana) 2124427C gamma-Glu transpeptidase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3845011/11gamma-glutamyltranspeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38390Os.5446.1.S1_at11/114+22610244..22611312wound/stress protein, putative, expressed
LOC_Os04g38400OsAffx.4013.1.S1_at11/114+22614946..22616283Ethylene insensitive 3 family protein, expressed
LOC_Os04g38410Os.5869.1.S1_a_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38410Os.5869.3.S1_x_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38420Os.52653.1.S1_at11/114+22618801..22621456oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g38430Os.47983.1.A1_at11/114+22629863..22632500Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g38440OsAffx.26373.1.S1_at7/114+22632513..22635029hypothetical protein
LOC_Os04g38450Os.10714.1.S1_s_at11/114+22636289..22641735gamma-glutamyltranspeptidase family protein, expressed
LOC_Os04g38460OsAffx.26375.1.S1_at11/114+22643782..22644345hypothetical protein
LOC_Os04g38470OsAffx.4014.1.S1_at11/114+22646912..22647586hypothetical protein
LOC_Os04g38480Os.16934.1.S1_at10/114+22648195..22653439BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os04g38490OsAffx.26376.1.S1_at11/114+22659900..22660804hypothetical protein
LOC_Os04g38500OsAffx.4015.1.S1_at11/114+22661715..22662312hypothetical protein
LOC_Os04g38510OsAffx.14191.1.S1_at11/114+22664388..22664913hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003840molecular_functiongamma-glutamyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10714.1.S1_s_at--760--3551Chr04:22636830..22636854 (25 bp)
CATCAGCCAGCTCGTCGTGGACGAC
LOC_Os04g38450
Os.10714.1.S1_s_at--1121--10611Chr04:22636754..22636778 (25 bp)
TTCCCGGCCGGCTATTAGACCGGAG
LOC_Os04g38450
Os.10714.1.S1_s_at--1158--131Chr04:22636741..22636765 (25 bp)
ATTAGACCGGAGTGGCTGAGCTATA
LOC_Os04g38450
Os.10714.1.S1_s_at--724--1091Chr04:22636731..22636755 (25 bp)
AGTGGCTGAGCTATAGCTGCCTAGC
LOC_Os04g38450
Os.10714.1.S1_s_at--974--4871Chr04:22636722..22636746 (25 bp)
GCTATAGCTGCCTAGCTTTGATGCA
LOC_Os04g38450
Os.10714.1.S1_s_at--1020--4551Chr04:22636681..22636705 (25 bp)
GCGCCATTCATGGACATATTTGTAC
LOC_Os04g38450
Os.10714.1.S1_s_at--942--5671Chr04:22636669..22636693 (25 bp)
GACATATTTGTACACGTCGTTCTGT
LOC_Os04g38450
Os.10714.1.S1_s_at--1086--8731Chr04:22636661..22636685 (25 bp)
TGTACACGTCGTTCTGTTCTATGAT
LOC_Os04g38450
Os.10714.1.S1_s_at--462--2171Chr04:22636658..22636682 (25 bp)
ACACGTCGTTCTGTTCTATGATTCT
LOC_Os04g38450
Os.10714.1.S1_s_at--983--9731Chr04:22636623..22636647 (25 bp)
TAATACTCCCTCAGCTTATAAAATG
LOC_Os04g38450
Os.10714.1.S1_s_at--351--2412Chr04:22636318..22636342 (25 bp)
AAAACGGATGGAGTAATAACTGCAG
LOC_Os04g38450
Target Sequence 
CATCAGCCAGCTCGTCGTGGACGACGTCGAGCGCCACGGCGGTCTGACCGCCGTCAGCNACCCCAGGAAAGGCGGCTTCC
CGGCCGGCTATTAGACCGGAGTGGCTGAGCTATAGCTGCCTAGCTTTGATGCAGCGATGATTGCTTNNTGCGCCATTCAT
GGACATATTTGTACACGTCGTTCTGTTCTATGATTCTATCGNATAAATAATACTCCCTCAGCTTATAAAATGNTTTTAAC
TTTGATCAAACTTAAACTGCTTCAAATTTAACTACTCCATCCGTTTTACAATGTAANTCATTCTATTATTTCCTATATTC
ATATTGATGCTAATGAATCTAGACATATATACCTATCTAGATTCATTAGTATCNATATGAATGTGAAAAATGCTAGAATG
ACTTACNTTGTGAAACGGAAAAAATAGTTTATAGACNAATATAGAAATATTTATAAACTTGGTCNAACTTGAANCNGTTT
GATTTTGATTAAATTCAGAATATTTTATAACTTAAAACGGATGGAGTAATAACTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10714.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis