Browse Element(s) Details


OsAffx.4013.1.S1_at

Description tigr:9632.m03623
TID=OsAffx.4013.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ethylene-insensitive3-like 4 protein., putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3840011/11Ethylene insensitive 3 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38340Os.22690.2.S1_x_at10/114+22587642..22591871Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os04g38350OsAffx.14188.1.S1_at9/114+22594546..22595372hypothetical protein
LOC_Os04g38360OsAffx.14189.1.S1_x_at11/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38360Os.23121.1.A1_at7/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38370OsAffx.14189.1.S1_x_at1/114+22603195..22603853dehydration stress-induced protein, putative
LOC_Os04g38380OsAffx.14190.1.S1_at10/114+22606636..22607525expressed protein
LOC_Os04g38390Os.5446.1.S1_at11/114+22610244..22611312wound/stress protein, putative, expressed
LOC_Os04g38400OsAffx.4013.1.S1_at11/114+22614946..22616283Ethylene insensitive 3 family protein, expressed
LOC_Os04g38410Os.5869.1.S1_a_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38410Os.5869.3.S1_x_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38420Os.52653.1.S1_at11/114+22618801..22621456oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g38430Os.47983.1.A1_at11/114+22629863..22632500Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g38440OsAffx.26373.1.S1_at7/114+22632513..22635029hypothetical protein
LOC_Os04g38450Os.10714.1.S1_s_at11/114+22636289..22641735gamma-glutamyltranspeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4013.1.S1_at--664--5351Chr04:22615683..22615707 (25 bp)
GAAGATCTCCCTGCTCAGAGCTAGC
LOC_Os04g38400
OsAffx.4013.1.S1_at--608--9091Chr04:22615694..22615718 (25 bp)
TGCTCAGAGCTAGCGCCGTCATCAA
LOC_Os04g38400
OsAffx.4013.1.S1_at--227--9611Chr04:22615712..22615736 (25 bp)
TCATCAAGCACCTGAGCCCGCGGTT
LOC_Os04g38400
OsAffx.4013.1.S1_at--1093--4651Chr04:22615731..22615755 (25 bp)
GCGGTTCGACCAGATTCGCAAGCTC
LOC_Os04g38400
OsAffx.4013.1.S1_at--877--2791Chr04:22615783..22615807 (25 bp)
AAGATGAGCGCCAGGGACGCCGATA
LOC_Os04g38400
OsAffx.4013.1.S1_at--230--9311Chr04:22615813..22615837 (25 bp)
TCCCGCGTCATCACCCAGGAGGAGG
LOC_Os04g38400
OsAffx.4013.1.S1_at--110--4711Chr04:22615976..22616000 (25 bp)
GCGGCGAGGAGATGCAGCTCTCTCT
LOC_Os04g38400
OsAffx.4013.1.S1_at--808--6211Chr04:22616026..22616050 (25 bp)
GAGGCGGACCGCAGCTCCATCGACG
LOC_Os04g38400
OsAffx.4013.1.S1_at--1077--9271Chr04:22616160..22616184 (25 bp)
TCCGGAGACCGTGCATGTCGACGAC
LOC_Os04g38400
OsAffx.4013.1.S1_at--1141--1051Chr04:22616198..22616222 (25 bp)
AGGGTCTCCTCGGTGTCGCGCAAGT
LOC_Os04g38400
OsAffx.4013.1.S1_at--185--8531Chr04:22616225..22616249 (25 bp)
TGGACATGAGCGACTTCCCGGACAG
LOC_Os04g38400
Target Sequence 
GAAGATCTCCCTGCTCAGAGCTAGCGCCGTCATCAAGCACCTGAGCCCGCGGTTCGACCAGATTCGCAAGCTCGTGTGGC
AGTCCAAGCGGCTTCAGCACAAGATGAGCGCCAGGGACGCCGATACCTGGTCCCGCGTCATCACCCAGGAGGAGGCGCTC
AGCCGCCACGCGCTGCGCTCCCTCCACATCACGCCGCTCGACGACGACGACGACGAACCCAACGAGGGGCCGACGCCGCG
CGAGTCGCACGCCGACAAGCGCAAGCGCGAGGTCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGATGCAGCTCTCTCTGC
CGGCGGACATCGACGTCGTCCCGGAGGCGGACCGCAGCTCCATCGACGAGCTGATGAAGCTCTACTACAGCTGCCTGCAG
GGGACCGACACCGACGGCGGCGGCGGCGAGCAGGGGAAGGACGTGGCGGCCGGAGCCGGCGGGGATGGGAGCGTCGCTCC
GGAGACCGTGCATGTCGACGACGACGACATGCTGGAGGGTCTCCTCGGTGTCGCGCAAGTGGTGGACATGAGCGACTTCC
CGGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis