Browse Element(s) Details


OsAffx.26373.1.S1_at

Description tigr:9632.m03627
TID=OsAffx.26373.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g384407/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38380OsAffx.14190.1.S1_at10/114+22606636..22607525expressed protein
LOC_Os04g38390Os.5446.1.S1_at11/114+22610244..22611312wound/stress protein, putative, expressed
LOC_Os04g38400OsAffx.4013.1.S1_at11/114+22614946..22616283Ethylene insensitive 3 family protein, expressed
LOC_Os04g38410Os.5869.1.S1_a_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38410Os.5869.3.S1_x_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38420Os.52653.1.S1_at11/114+22618801..22621456oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g38430Os.47983.1.A1_at11/114+22629863..22632500Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g38440OsAffx.26373.1.S1_at7/114+22632513..22635029hypothetical protein
LOC_Os04g38450Os.10714.1.S1_s_at11/114+22636289..22641735gamma-glutamyltranspeptidase family protein, expressed
LOC_Os04g38460OsAffx.26375.1.S1_at11/114+22643782..22644345hypothetical protein
LOC_Os04g38470OsAffx.4014.1.S1_at11/114+22646912..22647586hypothetical protein
LOC_Os04g38480Os.16934.1.S1_at10/114+22648195..22653439BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os04g38490OsAffx.26376.1.S1_at11/114+22659900..22660804hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26373.1.S1_at--1089--5291NONE
GAAGGTGCACCCGAAATGTCAGGTC
NONE
OsAffx.26373.1.S1_at--1014--2891NONE
AAGGTGCACCCGAAATGTCAGGTCA
NONE
OsAffx.26373.1.S1_at--876--7771NONE
GGTGCACCCGAAATGTCAGGTCACT
NONE
OsAffx.26373.1.S1_at--732--9011NONE
TGCACCCGAAATGTCAGGTCACTAT
NONE
OsAffx.26373.1.S1_at--870--8731Chr04:22633078..22633102 (25 bp)
TGTCAGGTCACTATCCGTGCTAGTG
LOC_Os04g38440
OsAffx.26373.1.S1_at--711--9631Chr04:22633076..22633100 (25 bp)
TCAGGTCACTATCCGTGCTAGTGCA
LOC_Os04g38440
OsAffx.26373.1.S1_at--300--1031Chr04:22633074..22633098 (25 bp)
AGGTCACTATCCGTGCTAGTGCACG
LOC_Os04g38440
OsAffx.26373.1.S1_at--203--7831Chr04:22633073..22633097 (25 bp)
GGTCACTATCCGTGCTAGTGCACGT
LOC_Os04g38440
OsAffx.26373.1.S1_at--500--1911Chr04:22633052..22633076 (25 bp)
ACGTGAACATGACGATTGTGGGAGA
LOC_Os04g38440
OsAffx.26373.1.S1_at--1081--1311Chr04:22632761..22633054 (25 bp)
AGAGGAGTGGGTCAGGCCGCTATGT
LOC_Os04g38440
OsAffx.26373.1.S1_at--463--8631Chr04:22632754..22633047 (25 bp)
TGGGTCAGGCCGCTATGTCAGCGAA
LOC_Os04g38440
Target Sequence 
GAAGGTGCACCCGAAATGTCAGGTCACTATCCGTGCTAGTGCACGTGAACATGACGATTGTGGGAGAGGAGTGGGTCAGG
CCGCTATGTCAGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis