Browse Element(s) Details


Os.5869.1.S1_a_at

Description gb:AK066070.1
DB_XREF= gi:32976088
TID=Os.5869.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5869 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055K10, full insert sequence.
FL= gb:AK066070.1 gb:AK104811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3841011/11Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38340Os.22690.2.S1_x_at10/114+22587642..22591871Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os04g38350OsAffx.14188.1.S1_at9/114+22594546..22595372hypothetical protein
LOC_Os04g38360OsAffx.14189.1.S1_x_at11/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38360Os.23121.1.A1_at7/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38370OsAffx.14189.1.S1_x_at1/114+22603195..22603853dehydration stress-induced protein, putative
LOC_Os04g38380OsAffx.14190.1.S1_at10/114+22606636..22607525expressed protein
LOC_Os04g38390Os.5446.1.S1_at11/114+22610244..22611312wound/stress protein, putative, expressed
LOC_Os04g38400OsAffx.4013.1.S1_at11/114+22614946..22616283Ethylene insensitive 3 family protein, expressed
LOC_Os04g38410Os.5869.1.S1_a_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38410Os.5869.3.S1_x_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38420Os.52653.1.S1_at11/114+22618801..22621456oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g38430Os.47983.1.A1_at11/114+22629863..22632500Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g38440OsAffx.26373.1.S1_at7/114+22632513..22635029hypothetical protein
LOC_Os04g38450Os.10714.1.S1_s_at11/114+22636289..22641735gamma-glutamyltranspeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009768biological_processphotosynthesis, light harvesting in photosystem I
GO:0015979biological_processphotosynthesis
GO:0009782cellular_componentphotosystem I antenna complex
GO:0009783cellular_componentphotosystem II antenna complex
GO:0030076cellular_componentlight-harvesting complex
GO:0016168molecular_functionchlorophyll binding
GO:0031409molecular_functionpigment binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5869.1.S1_a_at--477--8291Chr04:22617336..22617360 (25 bp)
GGCTACCCCGGCGGCAAGTTCTTCG
LOC_Os04g38410
Os.5869.1.S1_a_at--734--4831Chr04:22617335..22617359 (25 bp)
GCTACCCCGGCGGCAAGTTCTTCGA
LOC_Os04g38410
Os.5869.1.S1_a_at--389--2191Chr04:22617099..22617123 (25 bp)
ACACAGAGTTGGGTTTCGCTTGCAT
LOC_Os04g38410
Os.5869.1.S1_a_at--663--3311Chr04:22617098..22617122 (25 bp)
CACAGAGTTGGGTTTCGCTTGCATG
LOC_Os04g38410
Os.5869.1.S1_a_at--214--2151Chr04:22617097..22617121 (25 bp)
ACAGAGTTGGGTTTCGCTTGCATGC
LOC_Os04g38410
Os.5869.1.S1_a_at--367--3431Chr04:22617096..22617120 (25 bp)
CAGAGTTGGGTTTCGCTTGCATGCG
LOC_Os04g38410
Os.5869.1.S1_a_at--318--1351Chr04:22617095..22617119 (25 bp)
AGAGTTGGGTTTCGCTTGCATGCGC
LOC_Os04g38410
Os.5869.1.S1_a_at--49--1251Chr04:22617093..22617117 (25 bp)
AGTTGGGTTTCGCTTGCATGCGCGC
LOC_Os04g38410
Os.5869.1.S1_a_at--1129--6611Chr04:22617092..22617116 (25 bp)
GTTGGGTTTCGCTTGCATGCGCGCT
LOC_Os04g38410
Os.5869.1.S1_a_at--841--10831Chr04:22617091..22617115 (25 bp)
TTGGGTTTCGCTTGCATGCGCGCTT
LOC_Os04g38410
Os.5869.1.S1_a_at--659--8631Chr04:22617090..22617114 (25 bp)
TGGGTTTCGCTTGCATGCGCGCTTC
LOC_Os04g38410
Target Sequence 
GGCTACCCCGGCGGCAAGTTCTTCGACCCGCTCGGCCTCGGCGGCGAGACCAGGGACGGCGTCTACATCCCGGACACCGA
CAAGCTCGACCGGCTCAAGCTCGCCGAGATCAAGCACGNCCCGCCTCGCCATGCTCGCCATGCTCATCTTCTACTTCGAG
GCCGGCCAGGGCAAGACGCCNGCTCGGCNGCCCTCNGGCCTATNNNNNNNNANNCAANNNCNNCNNTNNGCTCGCCNATG
GATCTGACACACAGAGTTGGGTTTCGCTTGCATGCGCGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5869.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis