Browse Element(s) Details


OsAffx.14188.1.S1_at

Description tigr:9632.m03618
TID=OsAffx.14188.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g383509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38290Os.7262.1.S2_at11/114+22565730..22572172expressed protein
LOC_Os04g38290Os.7262.1.S1_at11/114+22565730..22572172expressed protein
LOC_Os04g38300OsAffx.14186.1.S1_at10/114+22573379..22574840hypothetical protein
LOC_Os04g38300OsAffx.26371.1.S1_at2/114+22573379..22574840hypothetical protein
LOC_Os04g38310Os.9424.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38310OsAffx.14187.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38320NANA4+22581616..22582293expressed protein
LOC_Os04g38330Os.50311.1.S1_at10/114+22583655..22586947Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os04g38340Os.22690.2.S1_x_at10/114+22587642..22591871Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os04g38350OsAffx.14188.1.S1_at9/114+22594546..22595372hypothetical protein
LOC_Os04g38360OsAffx.14189.1.S1_x_at11/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38360Os.23121.1.A1_at7/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38370OsAffx.14189.1.S1_x_at1/114+22603195..22603853dehydration stress-induced protein, putative
LOC_Os04g38380OsAffx.14190.1.S1_at10/114+22606636..22607525expressed protein
LOC_Os04g38390Os.5446.1.S1_at11/114+22610244..22611312wound/stress protein, putative, expressed
LOC_Os04g38400OsAffx.4013.1.S1_at11/114+22614946..22616283Ethylene insensitive 3 family protein, expressed
LOC_Os04g38410Os.5869.1.S1_a_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38410Os.5869.3.S1_x_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38420Os.52653.1.S1_at11/114+22618801..22621456oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14188.1.S1_at--407--10691Chr04:22594577..22594601 (25 bp)
TTGCCATCCTCGTTGCTACGGCGAT
LOC_Os04g38350
OsAffx.14188.1.S1_at--839--10711NONE
TTGCTACGGCGATCTTGCTATTGAC
NONE
OsAffx.14188.1.S1_at--252--1951NONE
ACGGCGATCTTGCTATTGACCTGTT
NONE
OsAffx.14188.1.S1_at--446--432Chr04:22595204..22595223 (20 bp)
ATCTTGCTATTGACCTGTTTCTGGC
LOC_Os04g38350
OsAffx.14188.1.S1_at--24--10231Chr04:22595206..22595230 (25 bp)
TATTGACCTGTTTCTGGCCTCTCGT
LOC_Os04g38350
OsAffx.14188.1.S1_at--31--8471Chr04:22595220..22595244 (25 bp)
TGGCCTCTCGTCTGCAGCAATAGGA
LOC_Os04g38350
OsAffx.14188.1.S1_at--282--9511Chr04:22595225..22595249 (25 bp)
TCTCGTCTGCAGCAATAGGAGGACA
LOC_Os04g38350
OsAffx.14188.1.S1_at--296--6191Chr04:22595243..22595267 (25 bp)
GAGGACAGGCAGATTCCCAAAAAAC
LOC_Os04g38350
OsAffx.14188.1.S1_at--981--8171Chr04:22595250..22595274 (25 bp)
GGCAGATTCCCAAAAAACAGGACTG
LOC_Os04g38350
OsAffx.14188.1.S1_at--716--2491Chr04:22595265..22595289 (25 bp)
AACAGGACTGCATCACAGGTCATCG
LOC_Os04g38350
OsAffx.14188.1.S1_at--80--1991Chr04:22595271..22595295 (25 bp)
ACTGCATCACAGGTCATCGATGGCC
LOC_Os04g38350
Target Sequence 
TTGCCATCCTCGTTGCTACGGCGATCTTGCTATTGACCTGTTTCTGGCCTCTCGTCTGCAGCAATAGGAGGACAGGCAGA
TTCCCAAAAAACAGGACTGCATCACAGGTCATCGATGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis