Browse Element(s) Details


OsAffx.14186.1.S1_at

Description tigr:9632.m03613
TID=OsAffx.14186.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3830010/11hypothetical protein
LOC_Os04g382306/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38270Os.53539.1.S1_at11/114+22554395..22559385expressed protein
LOC_Os04g38274NANA4+22560053..22560482hypothetical protein
LOC_Os04g38280NANA4+22564337..22565046hypothetical protein
LOC_Os04g38290Os.7262.1.S2_at11/114+22565730..22572172expressed protein
LOC_Os04g38290Os.7262.1.S1_at11/114+22565730..22572172expressed protein
LOC_Os04g38300OsAffx.14186.1.S1_at10/114+22573379..22574840hypothetical protein
LOC_Os04g38300OsAffx.26371.1.S1_at2/114+22573379..22574840hypothetical protein
LOC_Os04g38310Os.9424.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38310OsAffx.14187.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38320NANA4+22581616..22582293expressed protein
LOC_Os04g38330Os.50311.1.S1_at10/114+22583655..22586947Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os04g38340Os.22690.2.S1_x_at10/114+22587642..22591871Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os04g38350OsAffx.14188.1.S1_at9/114+22594546..22595372hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14186.1.S1_at--852--8432Chr04:22573414..22573438 (25 bp)
GGCCAAGATGAAGGGTACTGATCCA
LOC_Os04g38300
OsAffx.14186.1.S1_at--1008--3212Chr04:22573437..22573461 (25 bp)
CAAGTGGTTGGGTGCTCTCTGTCAA
LOC_Os04g38300
OsAffx.14186.1.S1_at--382--1311Chr04:22573480..22573504 (25 bp)
AGAGAAAGTCTCACCGTTTTCCCAG
LOC_Os04g38300
OsAffx.14186.1.S1_at--1016--2972Chr04:22573536..22573560 (25 bp)
AATGTGACCTTTTCAAGCACCTCGG
LOC_Os04g38300
OsAffx.14186.1.S1_at--349--8231Chr04:22530812..22531096 (25 bp)
GGCAAGGCTCCAGAGTCTCACTTGA
LOC_Os04g38230
OsAffx.14186.1.S1_at--712--1091Chr04:22574434..22574458 (25 bp)
AGTGGCACTTATGTTGTTTCTGAAC
LOC_Os04g38300
OsAffx.14186.1.S1_at--567--6831Chr04:22574449..22574583 (25 bp)
GTTTCTGAACACTTACGATTAATGG
LOC_Os04g38300
OsAffx.14186.1.S1_at--643--1272Chr04:22574585..22574609 (25 bp)
AGATCTTACGTTGCAGCTTTTGGCC
LOC_Os04g38300
OsAffx.14186.1.S1_at--1153--10372Chr04:22574602..22574626 (25 bp)
TTTTGGCCCCTATTGATGTAACTGA
LOC_Os04g38300
OsAffx.14186.1.S1_at--610--2731Chr04:22574627..22574651 (25 bp)
AAGCAAGATCAGAGTGGCCCACGGT
LOC_Os04g38300
OsAffx.14186.1.S1_at--113--3331Chr04:22574646..22574751 (25 bp)
CACGGTGCCTTATACAACCTCAAGG
LOC_Os04g38300
Target Sequence 
GGCCAAGATGAAGGGTACTGATCCAAGTGGTTGGGTGCTCTCTGTCAACACCGAGAACAAGAAGCTAGAGAAAGTCTCAC
CGTTTTCCCAGAAAATTCTGTTTTTCCATCGCATCTACCTGCAATGTGACCTTTTCAAGCACCTCGGCAAGGCTCCAGAG
TCTCACTTGACCAAGGTACTGGATAAACACACCAACAGAGACAAACGTAGAATCTTTGAAGAGAAGGAGGCAGATAGCTC
AAATAGTGACAGTGGCACTTATGTTGTTTCTGAACACTTACGATTAATGGGAGATCTTACGTTGCAGCTTTTGGCCCCTA
TTGATGTAACTGAAAGCAAGATCAGAGTGGCCCACGGTGCCTTATACAACCTCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis