Browse Element(s) Details


Os.53539.1.S1_at

Description gb:AK073191.1
DB_XREF= gi:32983214
TID=Os.53539.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033016G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033016G07, full insert sequence.
FL= gb:AK073191.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3827011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38230OsAffx.26371.1.S1_at11/114+22529585..22532153hypothetical protein
LOC_Os04g38230OsAffx.14186.1.S1_at6/114+22529585..22532153hypothetical protein
LOC_Os04g38240OsAffx.25962.1.S1_at9/114+22534220..22540036transposon protein, putative, Mutator sub-class
LOC_Os04g38250OsAffx.14185.1.S1_x_at11/114+22540378..22541278hypothetical protein
LOC_Os04g38260Os.7262.1.S1_at10/114+22542286..22547103expressed protein
LOC_Os04g38270Os.53539.1.S1_at11/114+22554395..22559385expressed protein
LOC_Os04g38274NANA4+22560053..22560482hypothetical protein
LOC_Os04g38280NANA4+22564337..22565046hypothetical protein
LOC_Os04g38290Os.7262.1.S2_at11/114+22565730..22572172expressed protein
LOC_Os04g38290Os.7262.1.S1_at11/114+22565730..22572172expressed protein
LOC_Os04g38300OsAffx.14186.1.S1_at10/114+22573379..22574840hypothetical protein
LOC_Os04g38300OsAffx.26371.1.S1_at2/114+22573379..22574840hypothetical protein
LOC_Os04g38310Os.9424.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38310OsAffx.14187.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38320NANA4+22581616..22582293expressed protein
LOC_Os04g38330Os.50311.1.S1_at10/114+22583655..22586947Lipoic acid synthetase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53539.1.S1_at--674--491Chr04:22554820..22554844 (25 bp)
ATCGAGGGTGCATCAAATTTTCAGC
LOC_Os04g38270
Os.53539.1.S1_at--957--1651Chr04:22554766..22554790 (25 bp)
AGCGCTCTCCTCTACGCAAGAAGGA
LOC_Os04g38270
Os.53539.1.S1_at--422--4071Chr04:22554731..22554755 (25 bp)
CGAGTCCCAATTGCCTTGTTCATCA
LOC_Os04g38270
Os.53539.1.S1_at--200--10791Chr04:22554664..22554688 (25 bp)
TTGTTTTCAGGCAGCGCTCTTCAAA
LOC_Os04g38270
Os.53539.1.S1_at--168--191Chr04:22554630..22554654 (25 bp)
ATTTATGGATTGCACGAGGTCTCAG
LOC_Os04g38270
Os.53539.1.S1_at--443--6151Chr04:22554615..22554639 (25 bp)
GAGGTCTCAGGTTGCTACGCTGATC
LOC_Os04g38270
Os.53539.1.S1_at--844--1831Chr04:22554599..22554623 (25 bp)
ACGCTGATCTGACTGCGCGATAACT
LOC_Os04g38270
Os.53539.1.S1_at--633--4571Chr04:22554585..22554609 (25 bp)
GCGCGATAACTTTCATATGCCGGGA
LOC_Os04g38270
Os.53539.1.S1_at--10--6671Chr04:22554502..22554526 (25 bp)
GTTGACAACTTGCTATCCTGCTGAA
LOC_Os04g38270
Os.53539.1.S1_at--563--231Chr04:22554474..22554498 (25 bp)
ATATTATCCTCAGTATTGTCGTCCT
LOC_Os04g38270
Os.53539.1.S1_at--266--51Chr04:22554460..22554484 (25 bp)
ATTGTCGTCCTGACTTGTGGGTGAA
LOC_Os04g38270
Target Sequence 
ATCGAGGGTGCATCAAATTTTCAGCTTGAGCTAAAGAGAAGGGGGATGTTCTCCAGCGCTCTCCTCTACGCAAGAAGGAG
ATTGCCCTCCGAGTCCCAATTGCCTTGTTCATCACCATCACTTATGCACCAAGCAAGCGTACGCAACAAAGGCTGTTTGT
TTTCAGGCAGCGCTCTTCAAAAGAATTTCCATTTATGGATTGCACGAGGTCTCAGGTTGCTACGCTGATCTGACTGCGCG
ATAACTTTCATATGCCGGGAATTCATGCTTAAATAGCCAATTAAGCCTGATCAGAATGTAACAAAATTCTTGTGGCAAGT
TGACAACTTGCTATCCTGCTGAACAAATATTATCCTCAGTATTGTCGTCCTGACTTGTGGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis