Browse Element(s) Details


Os.7262.1.S2_at

Description gb:AK064317.1
DB_XREF= gi:32974335
TID=Os.7262.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7262 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033055P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-D02, full insert sequence.
FL= gb:AK101647.1 gb:AK064317.1 gb:AK066187.1 gb:AK073427.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3829011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38250OsAffx.14185.1.S1_x_at11/114+22540378..22541278hypothetical protein
LOC_Os04g38260Os.7262.1.S1_at10/114+22542286..22547103expressed protein
LOC_Os04g38270Os.53539.1.S1_at11/114+22554395..22559385expressed protein
LOC_Os04g38274NANA4+22560053..22560482hypothetical protein
LOC_Os04g38280NANA4+22564337..22565046hypothetical protein
LOC_Os04g38290Os.7262.1.S2_at11/114+22565730..22572172expressed protein
LOC_Os04g38290Os.7262.1.S1_at11/114+22565730..22572172expressed protein
LOC_Os04g38300OsAffx.14186.1.S1_at10/114+22573379..22574840hypothetical protein
LOC_Os04g38300OsAffx.26371.1.S1_at2/114+22573379..22574840hypothetical protein
LOC_Os04g38310Os.9424.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38310OsAffx.14187.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38320NANA4+22581616..22582293expressed protein
LOC_Os04g38330Os.50311.1.S1_at10/114+22583655..22586947Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os04g38340Os.22690.2.S1_x_at10/114+22587642..22591871Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os04g38350OsAffx.14188.1.S1_at9/114+22594546..22595372hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7262.1.S2_at--689--4751Chr04:22566300..22566324 (25 bp)
GCTGAGTTGCTTGAGCACCCAATAA
LOC_Os04g38290
Os.7262.1.S2_at--119--7671Chr04:22566265..22566289 (25 bp)
GGTTTACTTAACTGCTTTTCACTGT
LOC_Os04g38290
Os.7262.1.S2_at--194--4891Chr04:22566252..22566276 (25 bp)
GCTTTTCACTGTGTTCATTCGAACA
LOC_Os04g38290
Os.7262.1.S2_at--409--5851Chr04:22566218..22566242 (25 bp)
GACCATGGATTATTGCTAGAGCTGC
LOC_Os04g38290
Os.7262.1.S2_at--818--5531Chr04:22566131..22566155 (25 bp)
GAAACAATCCTATTGATGCCAGTAT
LOC_Os04g38290
Os.7262.1.S2_at--540--7011Chr04:22566077..22566101 (25 bp)
GTACTTGGACAGATTCAGAGACGCT
LOC_Os04g38290
Os.7262.1.S2_at--1023--2011Chr04:22565958..22565982 (25 bp)
ACTAATGAGCTGAATCCTTGGTGTT
LOC_Os04g38290
Os.7262.1.S2_at--177--9251Chr04:22565944..22565968 (25 bp)
TCCTTGGTGTTTACTCAGATATCAG
LOC_Os04g38290
Os.7262.1.S2_at--993--3351Chr04:22565894..22565918 (25 bp)
CACCTTTGACTAGGGCTGCGTGGAC
LOC_Os04g38290
Os.7262.1.S2_at--127--3231Chr04:22565817..22565841 (25 bp)
CAAGTTATCAAGTCTCTCTGTCTGA
LOC_Os04g38290
Os.7262.1.S2_at--17--1571Chr04:22565775..22565799 (25 bp)
AGCTACTCAAGTTATTTTCTCCTGA
LOC_Os04g38290
Target Sequence 
GCTGAGTTGCTTGAGCACCCAATAATATATTTTCAGGTTTACTTAACTGCTTTTCACTGTGTTCATTCGAACAAAATCCT
GAGACCATGGATTATTGCTAGAGCTGCTAATGAGAAGCAGAACAGGAAGGTCAAGAGATGTGGTTATGATTCCATTGTTG
GTTTTGATGGAAACAATCCTATTGATGCCAGTATTGCAGTAAAGGTTTCCATTGATGTGATTGGTACTTGGACAGATTCA
GAGACGCTATATGCATAAGTTGCAAACAAGGATTATTTGTCTGTTAAATTACTTGAGCTGGTAAGAAAGGGGTCCAATAC
ATACTGGTTATTAGAACTCATAACTAATGAGCTGAATCCTTGGTGTTTACTCAGATATCAGAGATGGCTAGAAATTCTGG
GGCTCCCACCTTTGACTAGGGCTGCGTGGACAGGACAAGGGAAGATAGAACAGGACATTAGTGTNGACATAATTTCAGCA
TCTCAAGTTATCAAGTCTCTCTGTCTGAACAAGTCATCTATTAGGAGCTACTCAAGTTATTTTCTCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7262.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis