Browse Element(s) Details


OsAffx.26371.1.S1_at

Description tigr:9632.m03605
TID=OsAffx.26371.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3823011/11hypothetical protein
LOC_Os04g383002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38190NANA4+22507411..22514161retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g38200NANA4+22516334..22518779transposon protein, putative, unclassified
LOC_Os04g38220Os.17681.1.S1_at11/114+22525119..22529016Sugar transporter family protein, expressed
LOC_Os04g38230OsAffx.26371.1.S1_at11/114+22529585..22532153hypothetical protein
LOC_Os04g38230OsAffx.14186.1.S1_at6/114+22529585..22532153hypothetical protein
LOC_Os04g38240OsAffx.25962.1.S1_at9/114+22534220..22540036transposon protein, putative, Mutator sub-class
LOC_Os04g38250OsAffx.14185.1.S1_x_at11/114+22540378..22541278hypothetical protein
LOC_Os04g38260Os.7262.1.S1_at10/114+22542286..22547103expressed protein
LOC_Os04g38270Os.53539.1.S1_at11/114+22554395..22559385expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26371.1.S1_at--638--3231Chr04:22530463..22530487 (25 bp)
CAAGAGGTTGGTTCGTCCAGAGGAA
LOC_Os04g38230
OsAffx.26371.1.S1_at--216--2971Chr04:22530492..22530516 (25 bp)
AATGGGAGCCATGCGGCACCGAAAC
LOC_Os04g38230
OsAffx.26371.1.S1_at--204--2011Chr04:22530519..22530543 (25 bp)
ACTCTGCAGAGCTGGTGTGCGCCGA
LOC_Os04g38230
OsAffx.26371.1.S1_at--964--8691Chr04:22530534..22530558 (25 bp)
TGTGCGCCGATTCGTGTTCCCTTGA
LOC_Os04g38230
OsAffx.26371.1.S1_at--239--10651Chr04:22530550..22530574 (25 bp)
TTCCCTTGATTTGTTGCCTGTGATT
LOC_Os04g38230
OsAffx.26371.1.S1_at--162--2651Chr04:22530590..22530614 (25 bp)
AACCAGCTGACCTTTACGAACTTGA
LOC_Os04g38230
OsAffx.26371.1.S1_at--705--5471Chr04:22530607..22530631 (25 bp)
GAACTTGATTTGTACTTACCCCACA
LOC_Os04g38230
OsAffx.26371.1.S1_at--271--312Chr04:22574000..22574024 (25 bp)
ATACCAATCTTCTTGCTGCATTGGA
LOC_Os04g38300
OsAffx.26371.1.S1_at--1004--6071Chr04:22531453..22531477 (25 bp)
GAGTATGCCATTGGTCTCCTCTAAT
LOC_Os04g38230
OsAffx.26371.1.S1_at--843--10851Chr04:22531463..22531487 (25 bp)
TTGGTCTCCTCTAATTCGGCATCAT
LOC_Os04g38230
OsAffx.26371.1.S1_at--137--9452Chr04:22574226..22574250 (25 bp)
TCGGCATCATCTCTCGATCCAAAAA
LOC_Os04g38300
Target Sequence 
CAAGAGGTTGGTTCGTCCAGAGGAATGCCAATGGGAGCCATGCGGCACCGAAACTGACTCTGCAGAGCTGGTGTGCGCCG
ATTCGTGTTCCCTTGATTTGTTGCCTGTGATTTGGGATTCCAAGGACAACCAGCTGACCTTTACGAACTTGATTTGTACT
TACCCCACAATGGATTTGTACGATGACAATATTCTTTATGTAATGGCCAAGATGAAGGAGTCTCACTTGACCAAGGTACT
GGATAAACACACCAACAGGGAAATGATTGAATTGTTAGATACCAATCTTCTTGCTGCATTGGAGCAGCTCCAGAATATAG
AGACACACATAGAATCTTTGAAGAGAAGGTACAATTGGAGTATGCCATTGGTCTCCTCTAATTCGGCATCATCTCTCGAT
CCAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis