Browse Element(s) Details


Os.17681.1.S1_at

Description gb:AK072059.1
DB_XREF= gi:32982082
TID=Os.17681.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17681 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111I22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111I22, full insert sequence.
FL= gb:AK072059.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3822011/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38180NANA4+22497618..22504226retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g38190NANA4+22507411..22514161retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g38200NANA4+22516334..22518779transposon protein, putative, unclassified
LOC_Os04g38220Os.17681.1.S1_at11/114+22525119..22529016Sugar transporter family protein, expressed
LOC_Os04g38230OsAffx.26371.1.S1_at11/114+22529585..22532153hypothetical protein
LOC_Os04g38230OsAffx.14186.1.S1_at6/114+22529585..22532153hypothetical protein
LOC_Os04g38240OsAffx.25962.1.S1_at9/114+22534220..22540036transposon protein, putative, Mutator sub-class
LOC_Os04g38250OsAffx.14185.1.S1_x_at11/114+22540378..22541278hypothetical protein
LOC_Os04g38260Os.7262.1.S1_at10/114+22542286..22547103expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17681.1.S1_at--387--5031Chr04:22528572..22528596 (25 bp)
GCAGCTTCAAGTACGCCACGTTCCT
LOC_Os04g38220
Os.17681.1.S1_at--129--9631Chr04:22528620..22528644 (25 bp)
TCATGACCGCCTTCGTGTGGGCGTT
LOC_Os04g38220
Os.17681.1.S1_at--1142--951Chr04:22528743..22528767 (25 bp)
AGGACGCCATGCTGCCGGAGGTCCT
LOC_Os04g38220
Os.17681.1.S1_at--129--8031Chr04:22528759..22528783 (25 bp)
GGAGGTCCTCGTGAACTGACAACGT
LOC_Os04g38220
Os.17681.1.S1_at--151--331Chr04:22528784..22528808 (25 bp)
ATACTGTACGTGTTCTCTGCCTTGA
LOC_Os04g38220
Os.17681.1.S1_at--376--4711Chr04:22528816..22528840 (25 bp)
GCGGCGCTGCATTAATTCGTGGGAA
LOC_Os04g38220
Os.17681.1.S1_at--765--9431Chr04:22528864..22528888 (25 bp)
TCTGGTTTAACGGTTCCTACATGGT
LOC_Os04g38220
Os.17681.1.S1_at--82--7911Chr04:22528886..22528910 (25 bp)
GGTTGAATACCATCCCGTGTTTGTC
LOC_Os04g38220
Os.17681.1.S1_at--276--4251Chr04:22528900..22528924 (25 bp)
CCGTGTTTGTCCTCTTGCGAAAAAT
LOC_Os04g38220
Os.17681.1.S1_at--490--251Chr04:22528948..22528972 (25 bp)
ATCCAAAGTCCGTGTTCTATTTTAG
LOC_Os04g38220
Os.17681.1.S1_at--231--5171Chr04:22528988..22529012 (25 bp)
GCAAGACTTGTCGAGGATGGATTCT
LOC_Os04g38220
Target Sequence 
GCAGCTTCAAGTACGCCACGTTCCTCTACTACGCGGCCTGGGTCGCCGTCATGACCGCCTTCGTGTGGGCGTTCCTGCCG
GAGACCAAGGGGGTGCCGCTCGAGGCCATGGGCGCCGTCTGGGCGCNGGCACTGGTACTGGCGGCGCTTCGTGCAGCCGC
CACCGGCGGCCAAGGACGCCATGCTGCCGGAGGTCCTCGTGAACTGACAACGTATACTGTACGTGTTCTCTGCCTTGACC
GTGTGGCGGCGCTGCATTAATTCGTGGGAAGTTGTGTAAAATTAAATCTGGTTTCTGGTTTAACGGTTCCTACATGGTTG
AATACCATCCCGTGTTTGTCCTCTTGCGAAAAATTTGTATTGTTTACATATGAACAAATCCAAAGTCCGTGTTCTATTTT
AGTTTCTTACCAAGATTGCAAGACTTGTCGAGGATGGATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis