Browse Element(s) Details


Os.9424.1.S1_at

Description gb:AK103788.1
DB_XREF= gi:32988997
TID=Os.9424.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9424 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033145I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033145I18, full insert sequence.
FL= gb:AK101129.1 gb:AK103788.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3831011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38270Os.53539.1.S1_at11/114+22554395..22559385expressed protein
LOC_Os04g38274NANA4+22560053..22560482hypothetical protein
LOC_Os04g38280NANA4+22564337..22565046hypothetical protein
LOC_Os04g38290Os.7262.1.S2_at11/114+22565730..22572172expressed protein
LOC_Os04g38290Os.7262.1.S1_at11/114+22565730..22572172expressed protein
LOC_Os04g38300OsAffx.14186.1.S1_at10/114+22573379..22574840hypothetical protein
LOC_Os04g38300OsAffx.26371.1.S1_at2/114+22573379..22574840hypothetical protein
LOC_Os04g38310Os.9424.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38310OsAffx.14187.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38320NANA4+22581616..22582293expressed protein
LOC_Os04g38330Os.50311.1.S1_at10/114+22583655..22586947Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os04g38340Os.22690.2.S1_x_at10/114+22587642..22591871Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os04g38350OsAffx.14188.1.S1_at9/114+22594546..22595372hypothetical protein
LOC_Os04g38360OsAffx.14189.1.S1_x_at11/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38360Os.23121.1.A1_at7/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38370OsAffx.14189.1.S1_x_at1/114+22603195..22603853dehydration stress-induced protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9424.1.S1_at--1026--51Chr04:22576447..22576471 (25 bp)
ATTGCACTGATCTAATCGCCGCAGG
LOC_Os04g38310
Os.9424.1.S1_at--362--3731Chr04:22576417..22576441 (25 bp)
CTAATCTGGACTGGCTACTTTTACC
LOC_Os04g38310
Os.9424.1.S1_at--316--9891Chr04:22576402..22576426 (25 bp)
TACTTTTACCCTCATCGCTGAAGTC
LOC_Os04g38310
Os.9424.1.S1_at--938--4751Chr04:22576386..22576410 (25 bp)
GCTGAAGTCCGTGGCATGTGCTCTT
LOC_Os04g38310
Os.9424.1.S1_at--1040--10652Chr04:31741891..31741926 (24 bp)
TTCCTGGACCCTGGTTCTTGATCAT
NONE
Os.9424.1.S1_at--969--8891Chr04:22576335..22576359 (25 bp)
TGAGAGCTGATATCTTGGCCCTGAT
LOC_Os04g38310
Os.9424.1.S1_at--633--10871Chr04:22576321..22576345 (25 bp)
TTGGCCCTGATATCATCTAGAGTCA
LOC_Os04g38310
Os.9424.1.S1_at--574--5711Chr04:22576287..22576311 (25 bp)
GACTCAGCTTATGTGTTGTAAACTT
LOC_Os04g38310
Os.9424.1.S1_at--509--131Chr04:22576229..22576253 (25 bp)
ATTAATCTCCTTGGACTGAGACTGA
LOC_Os04g38310
Os.9424.1.S1_at--492--10231Chr04:22576195..22576219 (25 bp)
TATTGGTTCATTTTTGTGAGCTCAT
LOC_Os04g38310
Os.9424.1.S1_at--973--7371Chr04:22576180..22576204 (25 bp)
GTGAGCTCATGGTATCATCAGGAAA
LOC_Os04g38310
Target Sequence 
ATTGCACTGATCTAATCGCCGCAGGCTGCCCTAATCTGGACTGGCTACTTTTACCCTCATCGCTGAAGTCCGTGGCATGT
GCTCTTCCTGGACCCTGGTTCTTGATCATGGTTGAGAGCTGATATCTTGGCCCTGATATCATCTAGAGTCAGCAGAATCT
GACTCAGCTTATGTGTTGTAAACTTGACTTAATCTCATCTGTCTTATGGTACTTATGTATTAATCTCCTTGGACTGAGAC
TGAAATAAGTTTTATTGGTTCATTTTTGTGAGCTCATGGTATCATCAGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis