Browse Element(s) Details


Os.47983.1.A1_at

Description gb:AK061416.1
DB_XREF= gi:32971434
TID=Os.47983.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-306-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D12, full insert sequence.
FL= gb:AK061416.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3843011/11Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g291701/11retrotransposon protein, putative, unclassified
LOC_Os01g380201/11retrotransposon protein, putative, unclassified
LOC_Os08g203401/11retrotransposon protein, putative, unclassified
LOC_Os06g315501/11retrotransposon protein, putative, unclassified
LOC_Os02g169701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38380OsAffx.14190.1.S1_at10/114+22606636..22607525expressed protein
LOC_Os04g38390Os.5446.1.S1_at11/114+22610244..22611312wound/stress protein, putative, expressed
LOC_Os04g38400OsAffx.4013.1.S1_at11/114+22614946..22616283Ethylene insensitive 3 family protein, expressed
LOC_Os04g38410Os.5869.1.S1_a_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38410Os.5869.3.S1_x_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38420Os.52653.1.S1_at11/114+22618801..22621456oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g38430Os.47983.1.A1_at11/114+22629863..22632500Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g38440OsAffx.26373.1.S1_at7/114+22632513..22635029hypothetical protein
LOC_Os04g38450Os.10714.1.S1_s_at11/114+22636289..22641735gamma-glutamyltranspeptidase family protein, expressed
LOC_Os04g38460OsAffx.26375.1.S1_at11/114+22643782..22644345hypothetical protein
LOC_Os04g38470OsAffx.4014.1.S1_at11/114+22646912..22647586hypothetical protein
LOC_Os04g38480Os.16934.1.S1_at10/114+22648195..22653439BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47983.1.A1_at--250--95514Chr10:8319108..8319127 (20 bp)
TCTTAACAACGAAGCTTCAGATCAT
NONE
Os.47983.1.A1_at--910--3171Chr04:22632104..22632125 (22 bp)
AATTGTGATAGGATCTGCTCTGGTA
LOC_Os04g38430
Os.47983.1.A1_at--597--471Chr04:22632113..22632137 (25 bp)
ATCTGCTCTGGTAATCATTGGGCTG
LOC_Os04g38430
Os.47983.1.A1_at--290--3611Chr04:22632128..22632152 (25 bp)
CATTGGGCTGTATTTCGTACTGTGG
LOC_Os04g38430
Os.47983.1.A1_at--831--2332Chr10:21616647..21616925 (25 bp)
AAAGAATAAGGAGGCCTCGTCGTCG
NONE
Os.47983.1.A1_at--289--4691Chr04:22632212..22632236 (25 bp)
GCGGCAACAATACGGCGGCCATGAT
LOC_Os04g38430
Os.47983.1.A1_at--29--5152Chr10:15931357..15931705 (25 bp)
GCAAACTGTCTAGTACTACTACGTA
NONE
Os.47983.1.A1_at--682--2171Chr04:22632326..22632350 (25 bp)
ACACCGCGCACTTGATGATCGTGGA
LOC_Os04g38430
Os.47983.1.A1_at--506--10391Chr04:22632403..22632427 (25 bp)
TTTTCCCTTCCTCCTATAGTATATG
LOC_Os04g38430
Os.47983.1.A1_at--277--9251Chr04:22632414..22632438 (25 bp)
TCCTATAGTATATGCCCGAGTATGC
LOC_Os04g38430
Os.47983.1.A1_at--652--4151Chr04:22632429..22632453 (25 bp)
CCGAGTATGCATATCAGGAGGGAAG
LOC_Os04g38430
Target Sequence 
TCTTAACAACGAAGCTTCAGATCATCACCGTGCTCTTTGTGGGGATAGTTGGATCAGGAATAGCGNTCTTGNCGATGTCA
TGGTGCGTNGANCANAGAGGNNCCTNTNTTCACGACGGCGTTCACGCCCCTCATCCAGATCATCGCAGCTGCTATCAACG
TCATCGTTCTCCATGAGCAACTCCATCTTGGAATTGTGATAGGATCTGCTCTGGTAATCATTGGGCTGTATTTCGTACTG
TGGGGAAAGAATAAGGAGGCCTCGTCGTCGTCTTCTCCAGCAAAGGAGGCTGTGCCTGCGCTGCGGCAACAATACGGCGG
CCATGATCAAGAAACGACTAATGATGTACAAATGCAAACTGTCTAGTACTACTACGTACTGAAACAATAATTAGTAGTAG
TAGCTAATTAGCATGCACACCGCGCACTTGATGATCGTGGATAAAGAAAAATGCATCATGAAAAAAGGAGTAAAAAAAAT
CCGGCCCTGTTTTTTTTCCCTTCCTCCTATAGTATATGCCCGAGTATGCATATCAGGAGGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47983.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis