Browse Element(s) Details


OsAffx.26375.1.S1_at

Description tigr:9632.m03629
TID=OsAffx.26375.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3846011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38420Os.52653.1.S1_at11/114+22618801..22621456oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g38430Os.47983.1.A1_at11/114+22629863..22632500Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g38440OsAffx.26373.1.S1_at7/114+22632513..22635029hypothetical protein
LOC_Os04g38450Os.10714.1.S1_s_at11/114+22636289..22641735gamma-glutamyltranspeptidase family protein, expressed
LOC_Os04g38460OsAffx.26375.1.S1_at11/114+22643782..22644345hypothetical protein
LOC_Os04g38470OsAffx.4014.1.S1_at11/114+22646912..22647586hypothetical protein
LOC_Os04g38480Os.16934.1.S1_at10/114+22648195..22653439BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os04g38490OsAffx.26376.1.S1_at11/114+22659900..22660804hypothetical protein
LOC_Os04g38500OsAffx.4015.1.S1_at11/114+22661715..22662312hypothetical protein
LOC_Os04g38510OsAffx.14191.1.S1_at11/114+22664388..22664913hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26375.1.S1_at--110--2711Chr04:22643813..22643837 (25 bp)
AAGCTAACAACAATCTATGGCATGG
LOC_Os04g38460
OsAffx.26375.1.S1_at--54--2451Chr04:22643821..22643845 (25 bp)
AACAATCTATGGCATGGGCTACACC
LOC_Os04g38460
OsAffx.26375.1.S1_at--1106--3051Chr04:22643824..22643848 (25 bp)
AATCTATGGCATGGGCTACACCGAG
LOC_Os04g38460
OsAffx.26375.1.S1_at--366--851Chr04:22643829..22643853 (25 bp)
ATGGCATGGGCTACACCGAGTTGGA
LOC_Os04g38460
OsAffx.26375.1.S1_at--1043--3351Chr04:22643879..22644254 (25 bp)
CACCGCCACTGCCAAAATGGGAAGA
LOC_Os04g38460
OsAffx.26375.1.S1_at--172--3331Chr04:22644240..22644260 (21 bp)
CACTGCCAAAATGGGAAGAGTTGAT
LOC_Os04g38460
OsAffx.26375.1.S1_at--827--8191Chr04:22644262..22644286 (25 bp)
GGAAGAGATTGGACGTATCACATCA
LOC_Os04g38460
OsAffx.26375.1.S1_at--280--6611Chr04:22644268..22644292 (25 bp)
GATTGGACGTATCACATCAGATCTA
LOC_Os04g38460
OsAffx.26375.1.S1_at--492--8111Chr04:22644272..22644296 (25 bp)
GGACGTATCACATCAGATCTATGTC
LOC_Os04g38460
OsAffx.26375.1.S1_at--756--6891Chr04:22644276..22644300 (25 bp)
GTATCACATCAGATCTATGTCATCT
LOC_Os04g38460
OsAffx.26375.1.S1_at--1047--3551Chr04:22644282..22644306 (25 bp)
CATCAGATCTATGTCATCTTTCATG
LOC_Os04g38460
Target Sequence 
AAGCTAACAACAATCTATGGCATGGGCTACACCGAGTTGGAGGTGGAGAACCTGTGGGAAGGAGGTCACCGCCACTGCCA
AAATGGGAAGAGTTGATGGGAAGAGATTGGACGTATCACATCAGATCTATGTCATCTTTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis