Browse Element(s) Details


Os.24485.1.A1_at

Description gb:CA761901
DB_XREF= gi:25805940
DB_XREF=BR060014A10H11.ab1
CLONE=BR060014A10H11.ab1
TID=Os.24485.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24485 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g133302/11hypothetical protein
LOC_Os03g156002/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13290NANA6+7310746..7312078retrotransposon protein, putative, unclassified
LOC_Os06g13300OsAffx.4826.1.S1_at11/116+7314027..7316138hypothetical protein
LOC_Os06g13310OsAffx.15405.1.S1_at11/116+7317600..7322202SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13320Os.52735.1.S1_at11/116+7324615..7326450Protein kinase domain containing protein, expressed
LOC_Os06g13320OsAffx.24030.1.S1_x_at4/116+7324615..7326450Protein kinase domain containing protein, expressed
LOC_Os06g13330Os.24485.1.A1_at2/116+7332279..7334742hypothetical protein
LOC_Os06g13340OsAffx.27609.1.S1_at10/116+7337077..7338728hypothetical protein
LOC_Os06g13350OsAffx.15406.1.S1_at11/116+7341145..7343868SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13360NANA6+7344324..7348355retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24485.1.A1_at--1016--151NONE
ATTATTTATATTTTCTCCTTCGCTA
NONE
Os.24485.1.A1_at--960--831NONE
ATGGAGGGTATTGCCTAGGTCTGCA
NONE
Os.24485.1.A1_at--65--3711NONE
CTAGGTCTGCATGGAGGTTTTTAAC
NONE
Os.24485.1.A1_at--526--6811Chr10:1000946..1001425 (25 bp)
GTTTTTAACTAGGTCTGCAGGTACT
NONE
Os.24485.1.A1_at--185--6974Chr12:19607496..19607515 (20 bp)
GTAGCTTTGTAATCATTTGCCATGG
NONE
Os.24485.1.A1_at--311--211NONE
ATTTGCCATGGATTTCCACATGCCA
NONE
Os.24485.1.A1_at--996--2271Chr10:1000725..1000753 (25 bp)
AAATGCGACCATTAGCTACCTCCAA
NONE
Os.24485.1.A1_at--125--2372Chr06:7332952..7332976 (25 bp)
AAACCAACTAATCCTGACCTCCTGT
LOC_Os06g13330
Os.24485.1.A1_at--804--4291NONE
CCTCTCTCCCTGTAACAATCATGAA
NONE
Os.24485.1.A1_at--609--4755Chr12:19607788..19607812 (25 bp)
GCTGAACTTGGCAAACTTGAGCTTT
NONE
Os.24485.1.A1_at--705--5791Chr10:1000524..1000548 (25 bp)
GACGAAGGATTCACATGTGCTTTTT
NONE
Target Sequence 
ATTATTTATATTTTCTCCTTCGCTAAATATTTCTCTACAGCTACTTTTCTTCGAACAAGGAATTAATGGAGGGTATTGCC
TAGGTCTGCATGGAGGTTTTTAACTAGGTCTGCAGGTACTTNTGAGTTTCATGGGTGATGTGTTCTGTAGCTTTGTAATC
ATTTGCCATGGATTTCCACATGCCAATCTTTAATGTTTTTTTTATGAATGAATAGTGGAAGCACTGAAGGAATCCCAAAA
GGAAATTGAATTTGTCATCACCATCACAAATCTAATTTTCAATAGAAACTCAAAGATGTAGATGTGCTAAAACAAATGCG
ACCATTAGCTACCTCCAAACCAACTAATCCTGACCTCCTGTCATCAACTGACAAGTGACAACCCTCTCTCCCTGTAACAA
TCATGAAAAGAGTTGTGCCTGTGCAAAGTTTGAGTTCCAGCTGAACTTGGCAAACTTGAGCTTTTTGAACTGTAAGAAAT
TTTATCGTGTCTAAATACTGCAATTGCAGAGCCATGACGAAGGATTCACATGTGCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24485.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis