Browse Element(s) Details


OsAffx.15406.1.S1_at

Description tigr:9634.m01326
TID=OsAffx.15406.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1335011/11SAM dependent carboxyl methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13310OsAffx.15405.1.S1_at11/116+7317600..7322202SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13320Os.52735.1.S1_at11/116+7324615..7326450Protein kinase domain containing protein, expressed
LOC_Os06g13320OsAffx.24030.1.S1_x_at4/116+7324615..7326450Protein kinase domain containing protein, expressed
LOC_Os06g13330Os.24485.1.A1_at2/116+7332279..7334742hypothetical protein
LOC_Os06g13340OsAffx.27609.1.S1_at10/116+7337077..7338728hypothetical protein
LOC_Os06g13350OsAffx.15406.1.S1_at11/116+7341145..7343868SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13360NANA6+7344324..7348355retrotransposon protein, putative, unclassified
LOC_Os06g13370OsAffx.25936.2.S1_x_at1/116+7362153..7365160transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g13370OsAffx.25936.5.S1_x_at1/116+7362153..7365160transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g13380NANA6+7366792..7367196hypothetical protein
LOC_Os06g13390OsAffx.15407.1.S1_at11/116+7368205..7369766SAM dependent carboxyl methyltransferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15406.1.S1_at--180--2391Chr06:7342571..7342595 (25 bp)
AAACATCTACATCACCAAGACTACC
LOC_Os06g13350
OsAffx.15406.1.S1_at--136--1411Chr06:7342554..7342578 (25 bp)
AGACTACCCCACTACACGTGGTGAA
LOC_Os06g13350
OsAffx.15406.1.S1_at--575--9671Chr06:7342488..7342512 (25 bp)
TCAAGTTACGCCACGAGGAACTAGT
LOC_Os06g13350
OsAffx.15406.1.S1_at--875--431Chr06:7341449..7341473 (25 bp)
ATCTACCTGTATATGGTCCGTCGGT
LOC_Os06g13350
OsAffx.15406.1.S1_at--1136--5651Chr06:7341384..7341408 (25 bp)
GACATGGACCATATGCATCTGTTTG
LOC_Os06g13350
OsAffx.15406.1.S1_at--450--6851Chr06:7341364..7341388 (25 bp)
GTTTGAGTGCAACTGGGATCCCTAT
LOC_Os06g13350
OsAffx.15406.1.S1_at--976--7511Chr06:7341299..7341323 (25 bp)
GTGGAATCAATGTCGCAAACTGTGT
LOC_Os06g13350
OsAffx.15406.1.S1_at--26--2571Chr06:7341282..7341306 (25 bp)
AACTGTGTTAGAGCCGTAACCGAGC
LOC_Os06g13350
OsAffx.15406.1.S1_at--767--5851Chr06:7341261..7341285 (25 bp)
GAGCCCCTAATTGCAAGCCATTTTG
LOC_Os06g13350
OsAffx.15406.1.S1_at--516--7591Chr06:7341232..7341256 (25 bp)
GGGCATATTAAGTGCACTGTTCACA
LOC_Os06g13350
OsAffx.15406.1.S1_at--624--8791Chr06:7341215..7341239 (25 bp)
TGTTCACAGACTATGCTCACCGTGT
LOC_Os06g13350
Target Sequence 
AAACATCTACATCACCAAGACTACCCCACTACACGTGGTGAAGCTATTCCAAGAGCAGTTCATCAAGGACGTCTCTCTCT
TCCTCAAGTTACGCCACGAGGAACTAGTGGATGGGGGGCGGATGGTACTAACAATTTATGGAAGAAAGAGTGAGGACCCA
TATAGTGGAGATGTAAATGATATTTTTGGTTTGCTTGGAAAATCACTACAATCTCTTGTTGCTGAGGGTCTCGTGGAGAA
GGAAAAGCTTGACTCCTTCAATCTACCTGTATATGGTCCGTCGGTTGGTGAGTTGGAGGAAATTGTGAATCGCGTCAATT
TGTTTGACATGGACCATATGCATCTGTTTGAGTGCAACTGGGATCCCTATGATGACTCACAAGGTGACATTGTGCACGAC
AGTGCCTTGAGTGGAATCAATGTCGCAAACTGTGTTAGAGCCGTAACCGAGCCCCTAATTGCAAGCCATTTTGGAGAGGG
CATATTAAGTGCACTGTTCACAGACTATGCTCACCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis