Browse Element(s) Details


OsAffx.15407.1.S1_at

Description tigr:9634.m01330
TID=OsAffx.15407.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1339011/11SAM dependent carboxyl methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13350OsAffx.15406.1.S1_at11/116+7341145..7343868SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13360NANA6+7344324..7348355retrotransposon protein, putative, unclassified
LOC_Os06g13370OsAffx.25936.2.S1_x_at1/116+7362153..7365160transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g13370OsAffx.25936.5.S1_x_at1/116+7362153..7365160transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g13380NANA6+7366792..7367196hypothetical protein
LOC_Os06g13390OsAffx.15407.1.S1_at11/116+7368205..7369766SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13399NANA6+7372075..7372597NA
LOC_Os06g13410OsAffx.4827.1.S1_at11/116+7375287..7375933hypothetical protein
LOC_Os06g13420OsAffx.27611.1.S1_at11/116+7377699..7379891hypothetical protein
LOC_Os06g13430NANA6+7387963..7392345retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15407.1.S1_at--797--1871Chr06:7369132..7369156 (25 bp)
ACAGTCCGTGGTGAAACTATTCCAA
LOC_Os06g13390
OsAffx.15407.1.S1_at--217--5931Chr06:7369107..7369131 (25 bp)
GAGCAGTTCTACAAGGACTTCTCCC
LOC_Os06g13390
OsAffx.15407.1.S1_at--13--8111Chr06:7369006..7369030 (25 bp)
GGACGCACGCAGTGGATCAGAACTA
LOC_Os06g13390
OsAffx.15407.1.S1_at--326--3191Chr06:7368979..7369003 (25 bp)
CAATCTCTTTGGTTTGCTTGCACAA
LOC_Os06g13390
OsAffx.15407.1.S1_at--8--3071Chr06:7368578..7368971 (25 bp)
AATCTCTTGTCGCTGAGGGCTTGGT
LOC_Os06g13390
OsAffx.15407.1.S1_at--754--8891Chr06:7368538..7368562 (25 bp)
TGAGTCCTTCAATCTACCACTGTAT
LOC_Os06g13390
OsAffx.15407.1.S1_at--657--131Chr06:7368354..7368378 (25 bp)
ATTAGAGCCGCACTGCAGCCCTTAA
LOC_Os06g13390
OsAffx.15407.1.S1_at--956--3371Chr06:7368339..7368363 (25 bp)
CAGCCCTTAATTGCATCTTATTTTG
LOC_Os06g13390
OsAffx.15407.1.S1_at--697--5371Chr06:7368312..7368336 (25 bp)
GAAGACATACTCAATGCGTTGTTTG
LOC_Os06g13390
OsAffx.15407.1.S1_at--355--6851Chr06:7368292..7368316 (25 bp)
GTTTGAAGAATATGCTCACCGTGTT
LOC_Os06g13390
OsAffx.15407.1.S1_at--671--6851Chr06:7368238..7368262 (25 bp)
GTTTGCTTTTATTGTCGTATCTTTG
LOC_Os06g13390
Target Sequence 
ACAGTCCGTGGTGAAACTATTCCAAGAGCAGTTCTACAAGGACTTCTCCCTCTTCCTCACGTTACGCCATGAGGAACTCG
TGCTTGGGGGCCAGATGGTACTGACATTTTGTGGGAGAAAGAATGAGGACGCACGCAGTGGATCAGAACTAAACAATCTC
TTTGGTTTGCTTGCACAATCACTACAATCTCTTGTCGCTGAGGGCTTGGTGGAGAAGGAAAACCTTGAGTCCTTCAATCT
ACCACTGTATGGGCCATCCGTCGGTGAGGTAGATGAAATAGTGAAGAACGTCAATTTGTTCGAAATGGATCACATCAATC
TGTTTGAGTGTAATTGGGATCCTTATGATGACTCACAAGGTGATATTGTGCATGACAGTGCCTTGAGTGGCATGAATGTA
GCAAAGTGCATTAGAGCCGCACTGCAGCCCTTAATTGCATCTTATTTTGGAGAAGACATACTCAATGCGTTGTTTGAAGA
ATATGCTCACCGTGTTGCCAAGCACCTTGAGAAGGAGAAGGGTAAGTTTGCTTTTATTGTCGTATCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis