Browse Element(s) Details


Os.24486.1.A1_at

Description gb:AK108161.1
DB_XREF= gi:32993370
TID=Os.24486.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-G12, full insert sequence.
FL= gb:AK108161.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4389011/11GNS1/SUR4 membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43850Os.54634.1.S1_at11/1112+27186781..27191737retrotransposon protein, putative, unclassified
LOC_Os12g43860Os.40360.1.S1_x_at1/1112+27200181..27200807hypothetical protein
LOC_Os12g43870NANA12+27205413..27205739hypothetical protein
LOC_Os12g43880OsAffx.32182.1.S1_at11/1112+27210143..27212401expressed protein
LOC_Os12g43890Os.24486.1.A1_at11/1112+27216117..27217280GNS1/SUR4 membrane family protein, putative, expressed
LOC_Os12g43900NANA12+27219001..27223042retrotransposon protein, putative, LINE subclass
LOC_Os12g43910NANA12+27223677..27224906retrotransposon protein, putative, LINE subclass
LOC_Os12g43930Os.33683.1.S1_at10/1112+27230138..27232311Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g43940Os.53453.1.S1_at10/1112+27232877..27237839TPR Domain containing protein, expressed
LOC_Os12g43950Os.6492.1.S1_at11/1112+27237930..27243182Associated with HOX family protein, expressed
LOC_Os12g43950Os.4650.1.S1_at1/1112+27237930..27243182Associated with HOX family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24486.1.A1_at--995--4011Chr12:27216526..27216550 (25 bp)
CGTCGGCGTCGTGTGGATGCACTTC
LOC_Os12g43890
Os.24486.1.A1_at--716--4131Chr12:27216434..27216458 (25 bp)
CGCTCCTCTGGGTCTTCTTGCATTG
LOC_Os12g43890
Os.24486.1.A1_at--237--9591Chr12:27216419..27216443 (25 bp)
TCTTGCATTGCTACGGCAAGCGCGG
LOC_Os12g43890
Os.24486.1.A1_at--125--4151Chr12:27216358..27216382 (25 bp)
CGCGCGCCACGACAAGGACCTATGA
LOC_Os12g43890
Os.24486.1.A1_at--860--2911Chr12:27216345..27216369 (25 bp)
AAGGACCTATGAGGTGAACCACCAC
LOC_Os12g43890
Os.24486.1.A1_at--11--9071Chr12:27216314..27216338 (25 bp)
TGCATCCTTGTAACATGTTCCTCAC
LOC_Os12g43890
Os.24486.1.A1_at--153--6691Chr12:27216298..27216322 (25 bp)
GTTCCTCACTACTCTACTACTTAGA
LOC_Os12g43890
Os.24486.1.A1_at--863--10711Chr12:27216273..27216297 (25 bp)
TTGTAAATAGGTGTGGCGTCCAAAC
LOC_Os12g43890
Os.24486.1.A1_at--1041--5951Chr12:27216184..27216208 (25 bp)
GAGCAATTCGATGATCCAATCCCTG
LOC_Os12g43890
Os.24486.1.A1_at--886--711Chr12:27216174..27216198 (25 bp)
ATGATCCAATCCCTGCTTACTTCTA
LOC_Os12g43890
Os.24486.1.A1_at--4--6811Chr12:27216132..27216156 (25 bp)
GTTATTGTGTTGTTCATGTCAGTAA
LOC_Os12g43890
Target Sequence 
CGTCGGCGTCGTGTGGATGCACTTCGGCGGCGTCGCCGGCGGCGGGTGCAGCGGCATCGGCGCCTGGGTCTTCAACACCC
TCCTCAACGCCGCGCTCCTCTGGGTCTTCTTGCATTGCTACGGCAAGCGCGGCGTCTGCGACGACGACGGCGGCGCCACC
GCCGCCAGCGCGCGCCACGACAAGGACCTATGAGGTGAACCACCACCCACCATGCATCCTTGTAACATGTTCCTCACTAC
TCTACTACTTAGATTGTAAATAGGTGTGGCGTCCAAACGGGGATCGAAGAGATTAACATGACNCAAAAAAAAAATCAACA
AACAAAGATGGGATTGGTGTAGGAGCAATTCGATGATCCAATCCCTGCTTACTTCTACTTNTTAGTGCTATGTTGTTATT
GTGTTGTTCATGTCAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24486.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis