Browse Element(s) Details


Os.24539.1.S1_at

Description gb:AK068860.1
DB_XREF= gi:32978885
TID=Os.24539.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013169D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169D12, full insert sequence.
FL= gb:AK068860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2111010/11leucyl-tRNA synthetase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21080OsAffx.17816.1.S1_x_at11/119+12706784..12707074hypothetical protein
LOC_Os09g21090OsAffx.17817.1.S1_x_at11/119+12712093..12712344hypothetical protein
LOC_Os09g21090OsAffx.17817.1.S1_at11/119+12712093..12712344hypothetical protein
LOC_Os09g21100OsAffx.17818.1.S1_at11/119+12720513..12725246Mov34/MPN/PAD-1 family protein
LOC_Os09g21100Os.15690.1.S1_at1/119+12720513..12725246Mov34/MPN/PAD-1 family protein
LOC_Os09g21110Os.24539.1.S1_at10/119+12729778..12734641leucyl-tRNA synthetase family protein, expressed
LOC_Os09g21120OsAffx.29955.1.S1_at11/119+12745594..12747732U-box domain containing protein
LOC_Os09g21130NANA9+12753490..12754265hypothetical protein
LOC_Os09g21140OsAffx.17819.1.S1_at11/119+12757361..12757741hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24539.1.S1_at--861--10831Chr09:12730346..12730370 (25 bp)
TTGGGCCCCATGCTTTAAATCTGAA
LOC_Os09g21110
Os.24539.1.S1_at--274--6951Chr09:12730248..12730272 (25 bp)
GTAGAGGTCTTGTCAGCTTCTGATG
LOC_Os09g21110
Os.24539.1.S1_at--423--4911Chr09:12730233..12730257 (25 bp)
GCTTCTGATGAAGCAACTCGTGCTA
LOC_Os09g21110
Os.24539.1.S1_at--335--2551Chr09:12730219..12730243 (25 bp)
AACTCGTGCTAAGGCTGGTGCTCAT
LOC_Os09g21110
Os.24539.1.S1_at--339--6811Chr09:12730194..12730218 (25 bp)
GTTTCAATGTTGGACAAGACCCCGC
LOC_Os09g21110
Os.24539.1.S1_at--759--3451Chr09:12730131..12730155 (25 bp)
CAGGAGTTTGAAGCCCAGCACTGAG
LOC_Os09g21110
Os.24539.1.S1_at--402--3411Chr09:12730116..12730140 (25 bp)
CAGCACTGAGCTTAAGTCGCAGAAT
LOC_Os09g21110
Os.24539.1.S1_at--681--8171Chr09:12730079..12730103 (25 bp)
GGAACTCTCGTGATATTTTTGTCAT
LOC_Os09g21110
Os.24539.1.S1_at--231--151Chr09:12730029..12730053 (25 bp)
ATTAGCTTGCGGCTTCTGCAATACT
LOC_Os09g21110
Os.24539.1.S1_at--696--211Chr09:12729980..12730004 (25 bp)
ATTTGTTCTTCCCTGTAACAGAGTG
LOC_Os09g21110
Os.24539.1.S1_at--116--331NONE
ATACTTATTATCAGGGCTCCATCCC
NONE
Target Sequence 
TTGGGCCCCATGCTTTAAATCTGAAGCTTCCATTTNGTGAAATGAATGTTCTCGAGGAGAATTTGGAGTTGATCAAGAGG
CAGGTAGGCCTTGACCATGTAGAGGTCTTGTCAGCTTCTGATGAAGCAACTCGTGCTAAGGCTGGTGCTCATGTTTCAAT
GTTGGACAAGACCCCGCCTTCTCCTGGTGAACCAGTAGCAATCTTNATCAGCAAGCAGGAGTTTGAAGCCCAGCACTGAG
CTTAAGTCGCAGAATGAATTGTTTACAGGAACTCTCGTGATATTTTTGTCATTTTCATGGACATATTAAACTNTTATATT
AGCTTGCGGCTTCTGCAATACTGCAGTATTTGCGGAAAATGAACANAATTTGTTCTTCCCTGTAACAGAGTGATGATCTT
GCAATACTCCCNTTTTGTAGAATGTTTAAGCTACTTATTGTGTCACTTATTTNGCAGTGCACTCGTTTTTAGTTAATAGC
TAGTAACTTATTTGCATGAATTTTTTGGTCACAAATTTTAGCCTCTTCATTGTAAACNTTCTGGAGACTTCCATGTTTAT
ATGTGAACTAATACTTATTATCAGGGCTCCATCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis