Browse Element(s) Details


Os.24657.1.S1_at

Description gb:AK099734.1
DB_XREF= gi:32984943
TID=Os.24657.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013090A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013090A11, full insert sequence.
FL= gb:AK099734.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3258011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32570Os.11048.1.A1_at11/115+18972424..18976455expressed protein
LOC_Os05g32580Os.24657.1.S1_at11/115+18988309..18995082expressed protein
LOC_Os05g32590Os.51750.1.S1_at11/115+18997886..18999918expressed protein
LOC_Os05g32600Os.2689.1.S1_a_at11/115+19000748..19006715CDC2+/CDC28-related protein kinase R2, putative, expressed
LOC_Os05g32600Os.12361.1.S1_at1/115+19000748..19006715CDC2+/CDC28-related protein kinase R2, putative, expressed
LOC_Os05g32610Os.35247.1.S1_at11/115+19010370..19016056Helicase conserved C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24657.1.S1_at--1130--9711Chr05:18994623..18994647 (25 bp)
TCAATCGCTTGGAACTTCTACGTGC
LOC_Os05g32580
Os.24657.1.S1_at--1032--6351Chr05:18994664..18994688 (25 bp)
GATGCCATCACTCATCATGTGGAGC
LOC_Os05g32580
Os.24657.1.S1_at--989--7511Chr05:18994682..18994706 (25 bp)
GTGGAGCAGCTCTCTGGTACAGCAG
LOC_Os05g32580
Os.24657.1.S1_at--380--1511Chr05:18994702..18994726 (25 bp)
AGCAGGCTAGGTTAATTCGTACACA
LOC_Os05g32580
Os.24657.1.S1_at--566--7691Chr05:18994787..18994811 (25 bp)
GGGTGCTGACTCTTAAACAAAACTT
LOC_Os05g32580
Os.24657.1.S1_at--118--831Chr05:18994825..18994849 (25 bp)
ATGGTTGAGCTGACGACTTACCCAG
LOC_Os05g32580
Os.24657.1.S1_at--304--10091Chr05:18994860..18994884 (25 bp)
TAGGCCGACGACTAAATGGTTTGCT
LOC_Os05g32580
Os.24657.1.S1_at--991--7031Chr05:18994914..18994938 (25 bp)
GTCAAAACCTTGTGTTTCTCCAGTA
LOC_Os05g32580
Os.24657.1.S1_at--868--611Chr05:18994972..18994996 (25 bp)
ATGCGGCAATGCTACTACTGGGTCA
LOC_Os05g32580
Os.24657.1.S1_at--81--9211Chr05:18994997..18995021 (25 bp)
TGCCACCGAGGCACCAATGATGTAA
LOC_Os05g32580
Os.24657.1.S1_at--765--7051Chr05:18995018..18995042 (25 bp)
GTAACTCTCTACCAGATACCAGTAC
LOC_Os05g32580
Target Sequence 
TCAATCGCTTGGAACTTCTACGTGCCCAGTCTCCCTGTCCTGATGCCATCACTCATCATGTGGAGCAGCTCTCTGGTACA
GCAGGCTAGGTTAATTCGTACACACANCTTCGGCAAGTAAAAGGGCTGTTTGAGGTAGATCCGTGTTGAAGGATTCTATT
CTAGGGGTGCTGACTCTTAAACAAAACTTCGGCAATTATATAATGGTTGAGCTGACGACTTACCCAGCCAAGCAACATAG
GCCGACGACTAAATGGTTTGCTCTTTGANCTGCCAAAGAGATTTTGAAATTGTCAAAACCTTGTGTTTCTCCAGTAACAT
TAAGTTATAAATTAGGGAAATGGAGAGCTATGCGGCAATGCTACTACTGGGTCATGCCACCGAGGCACCAATGATGTAAC
TCTCTACCAGATACCAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis