Browse Element(s) Details


Os.35247.1.S1_at

Description gb:AK068327.1
DB_XREF= gi:32978345
TID=Os.35247.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35247 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013136J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013136J21, full insert sequence.
FL= gb:AK068327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3261011/11Helicase conserved C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32580Os.24657.1.S1_at11/115+18988309..18995082expressed protein
LOC_Os05g32590Os.51750.1.S1_at11/115+18997886..18999918expressed protein
LOC_Os05g32600Os.2689.1.S1_a_at11/115+19000748..19006715CDC2+/CDC28-related protein kinase R2, putative, expressed
LOC_Os05g32600Os.12361.1.S1_at1/115+19000748..19006715CDC2+/CDC28-related protein kinase R2, putative, expressed
LOC_Os05g32610Os.35247.1.S1_at11/115+19010370..19016056Helicase conserved C-terminal domain containing protein, expressed
LOC_Os05g32620OsAffx.14923.1.S1_at11/115+19021547..19021816hypothetical protein
LOC_Os05g32630Os.5476.1.S1_at11/115+19025544..19029642Mitochondrial carrier protein, expressed
LOC_Os05g32640OsAffx.19640.1.S1_at1/115+19032005..19032454expressed protein
LOC_Os05g32650OsAffx.14924.1.S1_at11/115+19033669..19034315hypothetical protein
LOC_Os05g32660Os.21710.1.S1_at11/115+19034960..19039888Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35247.1.S1_at--127--8951Chr05:19015237..19015261 (25 bp)
TGACTTCCCATGACCAGCTGAAAGG
LOC_Os05g32610
Os.35247.1.S1_at--1152--3651Chr05:19015312..19015336 (25 bp)
CTTACAACCAGATTGCTCCTGAGTT
LOC_Os05g32610
Os.35247.1.S1_at--6--5451Chr05:19015559..19015583 (25 bp)
GAACCCTTGTGTAATCGCACTGGAA
LOC_Os05g32610
Os.35247.1.S1_at--594--5491Chr05:19015584..19015608 (25 bp)
GAACATACTATTGCTATGGCATCCG
LOC_Os05g32610
Os.35247.1.S1_at--469--851Chr05:19015599..19015623 (25 bp)
ATGGCATCCGTGGTCCAGAGTTAAA
LOC_Os05g32610
Os.35247.1.S1_at--425--291Chr05:19015623..19015763 (25 bp)
ATAGTTCTAGTTGACTGGCATGCAC
LOC_Os05g32610
Os.35247.1.S1_at--983--8491Chr05:19015755..19015778 (24 bp)
TGGCATGCACTGAGAAATTCCTGAT
LOC_Os05g32610
Os.35247.1.S1_at--480--9031Chr05:19015778..19015802 (25 bp)
TGCAGCAGGCTGTGGTATCCCTATA
LOC_Os05g32610
Os.35247.1.S1_at--411--8131Chr05:19015854..19015878 (25 bp)
GGACTAGTCAGTTCTTACATAATGG
LOC_Os05g32610
Os.35247.1.S1_at--1141--7791Chr05:19015913..19015937 (25 bp)
GGTCGCCGGCTGAAAAATCTTCTTG
LOC_Os05g32610
Os.35247.1.S1_at--612--7891Chr05:19015982..19016006 (25 bp)
GGTTCATTTCTGGTGGTCCAATATT
LOC_Os05g32610
Target Sequence 
TGACTTCCCATGACCAGCTGAAAGGCATGTTTTTAAAGATTCATTATCCACCAACTGAGTCAAACATTGTTTTTACTTAC
AACCAGATTGCTCCTGAGTTAAGTTAATAATGACTGGCATCAGATGGATTCATTCTTTAAGATGATGATTCATTAATTAT
AAGGTGAACCCTTGTGTAATCGCACTGGAAGAACATACTATTGCTATGGCATCCGTGGTCCAGAGTTAAATAGTTCTAGT
TGACTGGCATGCACTGAGAAATTCCTGATGCAGCAGGCTGTGGTATCCCTATACTCTATCAAATAATGGATCTTGGGTTG
CATTATGTCACGCATGNTCNAAATAGGACTAGTCAGTTCTTACATAATGGGTGCAAAGCATCAACNAATCTAGAATCGGC
ACAAGGTCGCCGGCTGAAAAATCTTCTTGTGTANAATAATGAATCTCCAGATGCGATGTATAATAATGCTATTGGTTCAT
TTCTGGTGGTCCAATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis