Browse Element(s) Details


OsAffx.14923.1.S1_at

Description tigr:9633.m02991
TID=OsAffx.14923.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3262011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32590Os.51750.1.S1_at11/115+18997886..18999918expressed protein
LOC_Os05g32600Os.2689.1.S1_a_at11/115+19000748..19006715CDC2+/CDC28-related protein kinase R2, putative, expressed
LOC_Os05g32600Os.12361.1.S1_at1/115+19000748..19006715CDC2+/CDC28-related protein kinase R2, putative, expressed
LOC_Os05g32610Os.35247.1.S1_at11/115+19010370..19016056Helicase conserved C-terminal domain containing protein, expressed
LOC_Os05g32620OsAffx.14923.1.S1_at11/115+19021547..19021816hypothetical protein
LOC_Os05g32630Os.5476.1.S1_at11/115+19025544..19029642Mitochondrial carrier protein, expressed
LOC_Os05g32640OsAffx.19640.1.S1_at1/115+19032005..19032454expressed protein
LOC_Os05g32650OsAffx.14924.1.S1_at11/115+19033669..19034315hypothetical protein
LOC_Os05g32660Os.21710.1.S1_at11/115+19034960..19039888Leucine Rich Repeat family protein, expressed
LOC_Os05g32670OsAffx.27121.1.S1_at11/115+19041119..19042634hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14923.1.S1_at--785--1051Chr05:19021593..19021617 (25 bp)
AGGGAAGGGCAGAGACACCTCCGTC
LOC_Os05g32620
OsAffx.14923.1.S1_at--8--8251Chr05:19021600..19021624 (25 bp)
GGCAGAGACACCTCCGTCAGGGAAG
LOC_Os05g32620
OsAffx.14923.1.S1_at--590--5631Chr05:19021606..19021630 (25 bp)
GACACCTCCGTCAGGGAAGCCATAT
LOC_Os05g32620
OsAffx.14923.1.S1_at--694--9631Chr05:19021616..19021640 (25 bp)
TCAGGGAAGCCATATCCACACAGGG
LOC_Os05g32620
OsAffx.14923.1.S1_at--483--7591Chr05:19021641..19021665 (25 bp)
GGGCTAGCAGGGTGATGAGCTCTCC
LOC_Os05g32620
OsAffx.14923.1.S1_at--724--591Chr05:19021686..19021710 (25 bp)
ATGCCTTCTTCGCTAGATTCGGTAT
LOC_Os05g32620
OsAffx.14923.1.S1_at--774--4851Chr05:19021697..19021721 (25 bp)
GCTAGATTCGGTATCGAGCTCACCT
LOC_Os05g32620
OsAffx.14923.1.S1_at--935--1251Chr05:19021700..19021724 (25 bp)
AGATTCGGTATCGAGCTCACCTTCC
LOC_Os05g32620
OsAffx.14923.1.S1_at--173--4191Chr05:19021727..19021751 (25 bp)
CCCTACCTCATGCAGATCGACATAG
LOC_Os05g32620
OsAffx.14923.1.S1_at--1054--5031Chr05:19021738..19021762 (25 bp)
GCAGATCGACATAGAGGACGAGCTT
LOC_Os05g32620
OsAffx.14923.1.S1_at--585--3571Chr05:19021747..19021771 (25 bp)
CATAGAGGACGAGCTTGACAGTGCT
LOC_Os05g32620
Target Sequence 
AGGGAAGGGCAGAGACACCTCCGTCAGGGAAGCCATATCCACACAGGGGGGCTAGCAGGGTGATGAGCTCTCCGACCGCT
GATGCCACCGCCTATGCCTTCTTCGCTAGATTCGGTATCGAGCTCACCTTCCCTCCCTACCTCATGCAGATCGACATAGA
GGACGAGCTTGACAGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis