Browse Element(s) Details


OsAffx.27121.1.S1_at

Description tigr:9633.m02996
TID=OsAffx.27121.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3267011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32620OsAffx.14923.1.S1_at11/115+19021547..19021816hypothetical protein
LOC_Os05g32630Os.5476.1.S1_at11/115+19025544..19029642Mitochondrial carrier protein, expressed
LOC_Os05g32640OsAffx.19640.1.S1_at1/115+19032005..19032454expressed protein
LOC_Os05g32650OsAffx.14924.1.S1_at11/115+19033669..19034315hypothetical protein
LOC_Os05g32660Os.21710.1.S1_at11/115+19034960..19039888Leucine Rich Repeat family protein, expressed
LOC_Os05g32670OsAffx.27121.1.S1_at11/115+19041119..19042634hypothetical protein
LOC_Os05g32680Os.50941.1.S1_at11/115+19047184..19052799pale cress protein, putative, expressed
LOC_Os05g32690NANA5+19054108..19054428hypothetical protein
LOC_Os05g32700NANA5+19065512..19069967retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27121.1.S1_at--9--9111Chr05:19041348..19041372 (25 bp)
TGCTCGTGCTCTTCTCGGTCGCGTT
LOC_Os05g32670
OsAffx.27121.1.S1_at--987--8991Chr05:19041573..19041597 (25 bp)
TGAAGGCGCTCGAGTTCGATGTCCA
LOC_Os05g32670
OsAffx.27121.1.S1_at--644--10631Chr05:19041587..19041611 (25 bp)
TTCGATGTCCAGCTCCAGACCGAGG
LOC_Os05g32670
OsAffx.27121.1.S1_at--269--8131Chr05:19041708..19041732 (25 bp)
GGAACAACCCGGATTACGAGTGCCT
LOC_Os05g32670
OsAffx.27121.1.S1_at--281--151Chr05:19041720..19041744 (25 bp)
ATTACGAGTGCCTCCGCGCGGAGCT
LOC_Os05g32670
OsAffx.27121.1.S1_at--1045--1531Chr05:19041741..19041765 (25 bp)
AGCTACGGCGGATGGCTCCACCAAA
LOC_Os05g32670
OsAffx.27121.1.S1_at--133--2391Chr05:19041763..19041787 (25 bp)
AAACGGCCGGGCTGTACTGCTCTTC
LOC_Os05g32670
OsAffx.27121.1.S1_at--549--1971Chr05:19041778..19041802 (25 bp)
ACTGCTCTTCCGCAACCGGTGTGGA
LOC_Os05g32670
OsAffx.27121.1.S1_at--694--2611Chr05:19041791..19041815 (25 bp)
AACCGGTGTGGATGTCCCATTGCTA
LOC_Os05g32670
OsAffx.27121.1.S1_at--54--8711Chr05:19041803..19041827 (25 bp)
TGTCCCATTGCTAAGCTGGAGGGCT
LOC_Os05g32670
OsAffx.27121.1.S1_at--28--5171Chr05:19042372..19042597 (25 bp)
GCAAGAGGTACCATTATCATCCAGG
LOC_Os05g32670
Target Sequence 
TGCTCGTGCTCTTCTCGGTCGCGTTCCTGCTCGCCTCCTCGCTCGCGCACGTCTCGCGCTCGCTGACCCCGCTGCTCGCC
TCGCCCCCGGCCGCCGCGGCGCTCGCCTCCGCGGCGGCCGCGATGCCCTACCTCGGCGCCGCGGCGGCGCTCGCCGGGGC
GACCTTCCTCTCCTGCAGCCGCCTCCCTCGCCGCCGCTGCCGCAACCCGCGGTGCCGGGGCCTCGTGAAGGCGCTCGAGT
TCGATGTCCAGCTCCAGACCGAGGAGGCCGTGCGCGCAGGCACGGGGAGCACCAGTGGCGGCGCCGACGCCGCCATGTGG
CGCGAGATCGAGGCGCTGCCGTGGAAGGGCGGGCAGGGTGGGAACAACCCGGATTACGAGTGCCTCCGCGCGGAGCTACG
GCGGATGGCTCCACCAAACGGCCGGGCTGTACTGCTCTTCCGCAACCGGTGTGGATGTCCCATTGCTAAGCTGGAGGGCT
GGGGTGTTCCAAAGAGCAAGCGCCGAAGCAAGAGGTACCATTATCATCCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis