Browse Element(s) Details


Os.24786.1.S1_s_at

Description gb:CA764361
DB_XREF= gi:27546269
DB_XREF=AF53-Rpf_03_D23_T7_090.ab1
CLONE=C0000863
TID=Os.24786.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24786 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567685.1 (A.thaliana) Expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4887011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48850Os.49507.1.S1_at11/114+28912714..289155861-aminocyclopropane-1-carboxylate synthase, putative, expressed
LOC_Os04g48860Os.5357.1.S1_at11/114+28930098..28931792expressed protein
LOC_Os04g48870OsAffx.26533.1.S1_at11/114+28933894..28934866expressed protein
LOC_Os04g48870Os.24786.1.S1_s_at11/114+28933894..28934866expressed protein
LOC_Os04g48880Os.8569.1.S1_at11/114+28938119..28940187beta-carotene hydroxylase, putative, expressed
LOC_Os04g48890OsAffx.26534.1.S1_at11/114+28941787..28942143hypothetical protein
LOC_Os04g48900NANA4+28949026..28951725retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os04g48910NANA4+28952146..28954859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g48920NANA4+28955475..28958400retrotransposon protein, putative, unclassified
LOC_Os04g48930Os.49111.1.S1_at9/114+28959795..28962564ferric-chelate reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24786.1.S1_s_at--679--4891Chr04:28934184..28934208 (25 bp)
GCTTCAAACATCTACCATACTAACC
LOC_Os04g48870
Os.24786.1.S1_s_at--616--911Chr04:28934213..28934237 (25 bp)
AGGCAATAACTCTGGCCTTCTTATC
LOC_Os04g48870
Os.24786.1.S1_s_at--297--3351Chr04:28934371..28934395 (25 bp)
CACGAGAGTCCGTTGTGCGCCTGGA
LOC_Os04g48870
Os.24786.1.S1_s_at--1079--8531Chr04:28934392..28934416 (25 bp)
TGGAGGGCCATCGTCGCTTGGATTT
LOC_Os04g48870
Os.24786.1.S1_s_at--744--4011Chr04:28934403..28934427 (25 bp)
CGTCGCTTGGATTTCTGTTTGGTGA
LOC_Os04g48870
Os.24786.1.S1_s_at--313--691Chr04:28934427..28934451 (25 bp)
ATGAGGATGCCTAACGTGCAAGTGC
LOC_Os04g48870
Os.24786.1.S1_s_at--529--7351Chr04:28934442..28934466 (25 bp)
GTGCAAGTGCAACTCTACAAGACCA
LOC_Os04g48870
Os.24786.1.S1_s_at--947--1371Chr04:28934461..28934485 (25 bp)
AGACCATAGCAGTGTTGTTATGACT
LOC_Os04g48870
Os.24786.1.S1_s_at--403--6791Chr04:28934477..28934501 (25 bp)
GTTATGACTGTACACCTATCCTTTG
LOC_Os04g48870
Os.24786.1.S1_s_at--61--9871Chr04:28934487..28934511 (25 bp)
TACACCTATCCTTTGCATCCATGGG
LOC_Os04g48870
Os.24786.1.S1_s_at--149--6171Chr04:28934693..28934717 (25 bp)
GAGGATGCGTGCTAATTGCTTTATC
LOC_Os04g48870
Target Sequence 
GCTTCAAACATCTACCATACTAACCAAGTAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCG
TTGTGCGCCTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTGCAACTCTACAAG
ACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGGGGTGGAGCAAGANTTGGCCNAAGTCTTGGAGA
CTTGGACCGGGGTATGTCTTGGGNTGTGCCTCTGTATCTTCANATATTTACGTTTATTNCCAACAATNCTTGTGCTNCAT
GTCCTGGTTTNAGGGATCTANNTTAANNTATGTACGTACGTGTGTGGAAAAGGTNTCCGCCGTATGGTGTGAGGATGCGT
GCTAATTGCTTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24786.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis