Browse Element(s) Details


Os.2488.1.S1_at

Description gb:AK100971.1
DB_XREF= gi:32986180
TID=Os.2488.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2488 (NCBI UniGene Cluster)
UG_TITLE=Saline-responsive OSSR1 (Sr1) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143C13, full insert sequence.
FL= gb:AK100971.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1284011/11inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12820Os.8741.1.S1_at11/113+6874291..6877468Poly polymerase catalytic domain containing protein, expressed
LOC_Os03g12830OsAffx.3214.1.S1_at11/113+6878954..6879414hypothetical protein
LOC_Os03g12840Os.2488.1.S1_at11/113+6881231..6886590inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g12850OsAffx.3215.1.S1_at11/113+6887259..6888246hypothetical protein
LOC_Os03g12860OsAffx.25077.1.S1_at11/113+6910822..6912441Homeobox associated leucine zipper family protein, expressed
LOC_Os03g12860Os.49754.1.S1_x_at10/113+6910822..6912441Homeobox associated leucine zipper family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046853biological_processinositol and derivative phosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003824molecular_functioncatalytic activity
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2488.1.S1_at--320--8911Chr03:6886156..6886180 (25 bp)
TGAGCACATATTCACCGATTTCTTG
LOC_Os03g12840
Os.2488.1.S1_at--659--6531Chr03:6886172..6886196 (25 bp)
GATTTCTTGCTGAATCTTGCGCAAA
LOC_Os03g12840
Os.2488.1.S1_at--177--2771Chr03:6886235..6886259 (25 bp)
AAGAGTCCTGCTGAACATTAACAAA
LOC_Os03g12840
Os.2488.1.S1_at--608--9811Chr03:6886268..6886292 (25 bp)
TAACGGTCTAGCAGTCAGTGTACAT
LOC_Os03g12840
Os.2488.1.S1_at--1066--6511Chr03:6886336..6886360 (25 bp)
GATTTAGGGTGTCTTCCCAGAAAAT
LOC_Os03g12840
Os.2488.1.S1_at--1076--2291Chr03:6886357..6886381 (25 bp)
AAATGGTGGCACTTACCGGATTAGA
LOC_Os03g12840
Os.2488.1.S1_at--1095--4031Chr03:6886402..6886426 (25 bp)
CGATTTTCTAATGCCGAGTGCTTGT
LOC_Os03g12840
Os.2488.1.S1_at--1137--9811Chr03:6886436..6886460 (25 bp)
TAACACTGAATGTTCCCAGCGTGCC
LOC_Os03g12840
Os.2488.1.S1_at--982--9391Chr03:6886462..6886486 (25 bp)
TCGTCAAGGCTTCTGTCTCAATAAT
LOC_Os03g12840
Os.2488.1.S1_at--1066--2971Chr03:6886545..6886566 (22 bp)
AATGTGGTGCTGTCAACTGTGGGCT
LOC_Os03g12840
Os.2488.1.S1_at--612--8671Chr03:6886565..6886585 (21 bp)
TGTGGGCTTCTGTCTCCATAATTAC
LOC_Os03g12840
Target Sequence 
TGAGCACATATTCACCGATTTCTTGCTGAATCTTGCGCAAAGCAAGTACAAGAAGTGCTNAAGCGGCGGCTGAAGTGCAA
AGAGTCCTGCTGAACATTAACAAAATGGAATGTAACGGTCTAGCAGTCAGTGTACATATCTCGGAGAAATAAGTTTAATC
CCAAGGCTTTGAGGAAGAGAGATTTAGGGTGTCTTCCCAGAAAATGGTGGCACTTACCGGATTAGAGAAGAGATGAAAAA
ATGGATCGATTTTCTAATGCCGAGTGCTTGTATAAATCACTAACACTGAATGTTCCCAGCGTGCCTTCGTCAAGGCTTCT
GTCTCAATAATTTCATTATCTTTTTCATGAGCAATCCTTNTTAGAATGNNTGGTTCTCTCTGGAAACTGCNAATGTGGTG
CTGTCAACTGTGGGCTTCTGTCTCCATAATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis