Browse Element(s) Details


Os.24917.1.S1_at

Description gb:AK110719.1
DB_XREF= gi:32995928
TID=Os.24917.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24917 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (OSJNBa0042P21.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-D10, full insert sequence.
FL= gb:AK110719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3679011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36790Os.24917.1.S1_at11/111+20791475..20796096Protein kinase domain containing protein, expressed
LOC_Os01g36800Os.19099.1.S1_x_at2/111+20799656..20801712retrotransposon, putative, centromere-specific
LOC_Os01g36810OsAffx.23532.1.S1_at11/111+20804828..20805472hypothetical protein
LOC_Os01g36820Os.22857.1.A1_at9/111+20806847..20809629expressed protein
LOC_Os01g36820Os.8753.4.S1_x_at2/111+20806847..20809629expressed protein
LOC_Os01g36830OsAffx.23533.1.S1_x_at11/111+20813209..20815482Polygalacturonase family protein, expressed
LOC_Os01g36840Os.15476.1.S1_s_at11/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.52174.1.S1_at11/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.2.S1_x_at10/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.3.S1_x_at9/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.2.S1_at8/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24917.1.S1_at--725--10851Chr01:20792798..20792822 (25 bp)
TTGGTTCACATGGAGGTCACTTCTT
LOC_Os01g36790
Os.24917.1.S1_at--473--4751Chr01:20791956..20791980 (25 bp)
GCTGACCGCAGCATCTACGAGGATA
LOC_Os01g36790
Os.24917.1.S1_at--56--3511Chr01:20791911..20791935 (25 bp)
CATGTCGTGCAGATTGGGCTGTCAT
LOC_Os01g36790
Os.24917.1.S1_at--792--8731Chr01:20791892..20791916 (25 bp)
TGTCATGCACCCAAGCAAACGCTGG
LOC_Os01g36790
Os.24917.1.S1_at--711--8471Chr01:20791870..20791894 (25 bp)
TGGCGACAGGCCTACAATGACGAAG
LOC_Os01g36790
Os.24917.1.S1_at--572--6551Chr01:20791807..20791831 (25 bp)
GATTATCTTGAGTGATCCTCCATTT
LOC_Os01g36790
Os.24917.1.S1_at--328--9231Chr01:20791789..20791813 (25 bp)
TCCATTTTTGGATGTCGAGGCCTTT
LOC_Os01g36790
Os.24917.1.S1_at--1078--2931Chr01:20791751..20791775 (25 bp)
AAGGCGAACAGTCTCGGTTGCTGTC
LOC_Os01g36790
Os.24917.1.S1_at--551--1891Chr01:20791723..20791747 (25 bp)
ACGTTCGGCTCATTCAGTATCAGGT
LOC_Os01g36790
Os.24917.1.S1_at--942--6711Chr01:20791700..20791724 (25 bp)
GTTCATCTCGGTCCTATCTAAGTGG
LOC_Os01g36790
Os.24917.1.S1_at--984--2751Chr01:20791619..20791643 (25 bp)
AAGACGGTCTACAGTTTTGTGTGAT
LOC_Os01g36790
Target Sequence 
TTGGTTCACATGGAGGTCACTTCTTGTTAACAAAGGTATGGAACCACTACAAGAANAAAGCAGTAGAAATGATCGCTGAC
CGCAGCATCTACGAGGATACCATCAGGGATGAGGTCATGCATGTCGTGCAGATTGGGCTGTCATGCACCCAAGCAAACGC
TGGCGACAGGCCTACAATGACGAAGGTTGTGGAGTTGCTGAGAAGCCACAGGCATGATGTGGAGATTATCTTGAGTGATC
CTCCATTTTTGGATGTCGAGGCCTTTGAGGATATCAAACAAGGCGAACAGTCTCGGTTGCTGTCCGCACGTTCGGCTCAT
TCAGTATCAGGTTCATCTCGGTCCTATCTAAGTGGAAGATAAGCTAAGCTTCTTTTTTTTTTNTTAAAAAAAATATCATA
GGAATATATATCAAGACGGTCTACAGTTTTGTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis