Browse Element(s) Details


Os.24948.1.A1_at

Description gb:AK099587.1
DB_XREF= gi:32984796
TID=Os.24948.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24948 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043C07, full insert sequence.
FL= gb:AK099587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g438509/11DNA repair protein recA, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43830OsAffx.13333.1.S1_at11/113+24521452..24522012hypothetical protein
LOC_Os03g43840Os.48042.1.S1_at11/113+24528744..24533424zinc finger protein, putative, expressed
LOC_Os03g43850Os.24948.1.A1_at9/113+24545620..24550666DNA repair protein recA, chloroplast precursor, putative, expressed
LOC_Os03g43860Os.8342.1.S1_at11/113+24550991..24554575SNF7 family protein, expressed
LOC_Os03g43870OsAffx.3505.1.S1_at11/113+24563639..24564169hypothetical protein
LOC_Os03g43880OsAffx.25525.1.S1_at11/113+24570524..24572122Patatin-like phospholipase family protein, expressed
LOC_Os03g43890Os.37345.1.S1_s_at11/113+24575491..24583690WD-40 repeat protein MSI1, putative, expressed
LOC_Os03g43890Os.37345.1.S1_at11/113+24575491..24583690WD-40 repeat protein MSI1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0009432biological_processSOS response
GO:0003677molecular_functionDNA binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24948.1.A1_at--266--2331NONE
AAAGTCTCCAGACCCTACAAGCAAG
NONE
Os.24948.1.A1_at--189--7431Chr03:24548640..24548664 (25 bp)
GTGTTCTTGATTGTGCTGAGCTGAT
LOC_Os03g43850
Os.24948.1.A1_at--724--4751Chr03:24548654..24548678 (25 bp)
GCTGAGCTGATGGAAGTCGTTGCAA
LOC_Os03g43850
Os.24948.1.A1_at--201--2731Chr03:24549620..24549644 (25 bp)
AAGCACTGCAGTATCTCCGAGAGAG
LOC_Os03g43850
Os.24948.1.A1_at--907--1351Chr03:24549639..24549663 (25 bp)
AGAGAGCCCTACCATCTGTGATGAG
LOC_Os03g43850
Os.24948.1.A1_at--992--8331Chr03:24550287..24550311 (25 bp)
GGCTGTTCGAGCCATGATACCAGAA
LOC_Os03g43850
Os.24948.1.A1_at--161--1411Chr03:24550318..24550342 (25 bp)
AGACATATGAGCCTGCTCGCTTTCG
LOC_Os03g43850
Os.24948.1.A1_at--803--5931Chr03:24550419..24550443 (25 bp)
GAGCAATTCCAAGCTTTTGGGTCCC
LOC_Os03g43850
Os.24948.1.A1_at--1108--5351Chr03:24550456..24550480 (25 bp)
GAAGACCAAGAGTGGCTCTTTCTTG
LOC_Os03g43850
Os.24948.1.A1_at--1106--10811NONE
TTGTGATGCCATATGTACCGTTGTT
NONE
Os.24948.1.A1_at--370--4231Chr03:24550587..24550611 (25 bp)
CCGTTGTTGGTATGCACTTGGTGTA
LOC_Os03g43850
Target Sequence 
AAAGTCTCCAGACCCTACAAGCAAGCTGAATTTGAGATCATCTTTGGGGAGGGCGTTAGTAAACTGGGATGTGTTCTTGA
TTGTGCTGAGCTGATGGAAGTCGTTGCAAAGAAAGGCTCATGGTATAGCTACAAAGAAATGAGATTGGGTCAAGGCAGAG
AAAAAGCACTGCAGTATCTCCGAGAGAGCCCTACCATCTGTGATGAGATAGAAAAGGCTGTTCGAGCCATGATACCAGAA
GGAGCAAGACATATGAGCCTGCTCGCTTTCGGGCGGTCATCATTGACCGAAGAAGAACAAGTAGACGATGAGTGATGGAT
GCATCTAATTTTGAAGATGAAAGTGCTGAGCAATTCCAAGCTTTTGGGTCCCCTGGTGAACGGAGAAGACCAAGAGTGGC
TCTTTCTTGAACTAATCAAGCATTGCATTGCTGGTAGTGGTAGGGAGTTGGGATTCNCTTAAGAGTTTGATTTGTGAGCA
ATCATTTGCTGCAACAGCATTGTGATGCCATATGTACCGTTGTTGGTATGCACTTGGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24948.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis