Browse Element(s) Details


Os.24952.1.S1_at

Description gb:AK059734.1
DB_XREF= gi:32969752
TID=Os.24952.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-202-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B01, full insert sequence.
FL= gb:AK059734.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5772010/11Two-component response regulator ARR3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57700Os.8444.1.S1_a_at11/114+34127493..34133264expressed protein
LOC_Os04g57700Os.8444.1.S1_s_at11/114+34127493..34133264expressed protein
LOC_Os04g57700Os.36208.1.S1_at8/114+34127493..34133264expressed protein
LOC_Os04g57710NANA4+34134913..34135389hypothetical protein
LOC_Os04g57720Os.24952.1.S1_at10/114+34156916..34158030Two-component response regulator ARR3, putative, expressed
LOC_Os04g57730OsAffx.4201.1.S1_at11/114+34163604..34168701Uracil-DNA glycosylase, putative, expressed
LOC_Os04g57740NANA4+34174089..34174865expressed protein
LOC_Os04g57750Os.5821.1.S1_at10/114+34178051..34179112Plastocyanin-like domain containing protein, expressed
LOC_Os04g57760Os.27395.1.S1_a_at11/114+34181023..34182505expressed protein
LOC_Os04g57760OsAffx.14458.1.S1_x_at11/114+34181023..34182505expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000160biological_processtwo-component signal transduction system (phosphorelay)
GO:0006950biological_processresponse to stress
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009736biological_processcytokinin mediated signaling
GO:0010017biological_processred or far red light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0000156molecular_functiontwo-component response regulator activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24952.1.S1_at--738--3231NONE
CAAGCGCGTCAAGGAATCGTCTCAG
NONE
Os.24952.1.S1_at--792--6291Chr04:34157630..34157654 (25 bp)
GATGATCGCTCGCTCGCCATGTTGG
LOC_Os04g57720
Os.24952.1.S1_at--652--10551Chr04:34157706..34157730 (25 bp)
TTCTTGGACATAGTTCTTCTTCTTC
LOC_Os04g57720
Os.24952.1.S1_at--363--10591Chr04:34157728..34157752 (25 bp)
TTCTGCTGCTGCCTCAAACAAGAAG
LOC_Os04g57720
Os.24952.1.S1_at--477--6031Chr04:34157773..34157797 (25 bp)
GAGATGATTAGCCTTACTGCCTTAG
LOC_Os04g57720
Os.24952.1.S1_at--1131--1671Chr04:34157782..34157806 (25 bp)
AGCCTTACTGCCTTAGCAAGTTAGA
LOC_Os04g57720
Os.24952.1.S1_at--1005--1031Chr04:34157816..34157840 (25 bp)
AGGTGTCAGGCATTTGCTTGTTCCC
LOC_Os04g57720
Os.24952.1.S1_at--600--4911Chr04:34157900..34157924 (25 bp)
GCTTCTGTTCAGGAGGTTTCTCTTG
LOC_Os04g57720
Os.24952.1.S1_at--425--5931Chr04:34157947..34157971 (25 bp)
GAGCATCAATCTGTTCTTTTTAACT
LOC_Os04g57720
Os.24952.1.S1_at--422--9811Chr04:34157967..34157991 (25 bp)
TAACTGTTTCAAGATCGGTCAGAGT
LOC_Os04g57720
Os.24952.1.S1_at--824--10491Chr04:34158004..34158028 (25 bp)
TTAAGTCTTGCCAATTAACCATGCA
LOC_Os04g57720
Target Sequence 
CAAGCGCGTCAAGGAATCGTCTCAGNNCAAGGAGATCCCGGTGGTGATCANGTCGTCGGAGNACGTGCCNAACCGGATCA
GCCGGTGCCTGGAGGAGGGCGCCGAGGACTTCCTGCTCAAGCCCGTACGCCCCTNNGACGTGTCGCGGCTNTGCAGCCGT
ATNAGATGATCGCTCGCTCGCCATGTTGGATCATGGAGAGGATGATTAACTCCTAGGATTTTTTTTGGTGGCTTTCTNNN
NCAATTCTTGGACATAGTTCTTCTTCTTCTGCTGCTGCCTCAAACAAGAAGCTAAACATTTGGGGCTTTAGGAGATGATT
AGCCTTACTGCCTTAGCAAGTTAGAATTGAAATTAGGTGTCAGGCATTTGCTTGTTCCCCTNNGTGTGCTCTGCNAAGAC
GCCATGAAAAAAAAACAGAGAGAGAAGAGATTCTTNTGAAGCTTCTGTTCAGGAGGTTTCTCTTGTCNCAATGTTGAAAT
GGCANCAGAGCATCAATCTGTTCTTTTTAACTGTTTCAAGATCGGTCAGAGTTTTGACATTAATTTAAGTCTTGCCAATT
AACCATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis