Browse Element(s) Details


Os.27395.1.S1_a_at

Description gb:AK119671.1
DB_XREF= gi:37989294
TID=Os.27395.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.27395 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-209-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-H08, full insert sequence.
FL= gb:AK071276.1 gb:AK119671.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5776011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57720Os.24952.1.S1_at10/114+34156916..34158030Two-component response regulator ARR3, putative, expressed
LOC_Os04g57730OsAffx.4201.1.S1_at11/114+34163604..34168701Uracil-DNA glycosylase, putative, expressed
LOC_Os04g57740NANA4+34174089..34174865expressed protein
LOC_Os04g57750Os.5821.1.S1_at10/114+34178051..34179112Plastocyanin-like domain containing protein, expressed
LOC_Os04g57760Os.27395.1.S1_a_at11/114+34181023..34182505expressed protein
LOC_Os04g57760OsAffx.14458.1.S1_x_at11/114+34181023..34182505expressed protein
LOC_Os04g57770Os.12921.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57770OsAffx.4202.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57780OsAffx.26647.1.S1_at10/114+34191367..34194102TPR Domain containing protein, expressed
LOC_Os04g57790Os.49179.1.S1_at11/114+34194379..34196563Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os04g57800Os.47989.1.S1_at10/114+34196864..34201247NPH3 family protein, expressed
LOC_Os04g57810Os.5112.1.S1_at11/114+34204464..34207169expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27395.1.S1_a_at--597--10571Chr04:34181264..34181288 (25 bp)
TTCTACAGGTACAGGGCAACATGGG
LOC_Os04g57760
Os.27395.1.S1_a_at--940--7711Chr04:34181241..34181265 (25 bp)
GGGTGGTGTCTCAGCCAAATGCAGT
LOC_Os04g57760
Os.27395.1.S1_a_at--888--7311Chr04:34181210..34181234 (25 bp)
GTGCTTTTTCTACCAGCTGTTACTA
LOC_Os04g57760
Os.27395.1.S1_a_at--175--1611Chr04:34181196..34181220 (25 bp)
AGCTGTTACTACTATCTGTGTGTCA
LOC_Os04g57760
Os.27395.1.S1_a_at--808--9891Chr04:34181187..34181211 (25 bp)
TACTATCTGTGTGTCAAGGTTGCCA
LOC_Os04g57760
Os.27395.1.S1_a_at--66--2911Chr04:34181172..34181196 (25 bp)
AAGGTTGCCACATATGAGAACACAG
LOC_Os04g57760
Os.27395.1.S1_a_at--302--1431Chr04:34181156..34181180 (25 bp)
AGAACACAGTGCAATTCGCACCCTT
LOC_Os04g57760
Os.27395.1.S1_a_at--9--111Chr04:34181143..34181167 (25 bp)
ATTCGCACCCTTTTGCAGATGTGGA
LOC_Os04g57760
Os.27395.1.S1_a_at--801--5511Chr04:34181101..34181125 (25 bp)
GAAAACCGTGGCAACTGTTCACCTA
LOC_Os04g57760
Os.27395.1.S1_a_at--329--7531Chr04:34181094..34181118 (25 bp)
GTGGCAACTGTTCACCTACCTATGT
LOC_Os04g57760
Os.27395.1.S1_a_at--437--10391Chr04:34181067..34181091 (25 bp)
TTTTGCGGCTTCATACATACTGTAT
LOC_Os04g57760
Target Sequence 
TTCTACAGGTACAGGGCAACATGGGGTGGTGTCTCAGCCAAATGCAGTGGTTTGGTGCTTTTTCTACCAGCTGTTACTAC
TATCTGTGTGTCAAGGTTGCCACATATGAGAACACAGTGCAATTCGCACCCTTTTGCAGATGTGGAATCCAGTAAAAACT
TGGGAAAACCGTGGCAACTGTTCACCTACCTATGTAATTTTGCGGCTTCATACATACTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27395.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis