Browse Element(s) Details


Os.12921.1.S1_at

Description gb:AU222951
DB_XREF= gi:15008563
DB_XREF=AU222951
CLONE=S2144
TID=Os.12921.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.12921 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5777011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57730OsAffx.4201.1.S1_at11/114+34163604..34168701Uracil-DNA glycosylase, putative, expressed
LOC_Os04g57740NANA4+34174089..34174865expressed protein
LOC_Os04g57750Os.5821.1.S1_at10/114+34178051..34179112Plastocyanin-like domain containing protein, expressed
LOC_Os04g57760Os.27395.1.S1_a_at11/114+34181023..34182505expressed protein
LOC_Os04g57760OsAffx.14458.1.S1_x_at11/114+34181023..34182505expressed protein
LOC_Os04g57770Os.12921.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57770OsAffx.4202.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57780OsAffx.26647.1.S1_at10/114+34191367..34194102TPR Domain containing protein, expressed
LOC_Os04g57790Os.49179.1.S1_at11/114+34194379..34196563Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os04g57800Os.47989.1.S1_at10/114+34196864..34201247NPH3 family protein, expressed
LOC_Os04g57810Os.5112.1.S1_at11/114+34204464..34207169expressed protein
LOC_Os04g57819NANA4+34208924..34209115NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12921.1.S1_at--1075--7592Chr11:16776709..16776733 (25 bp)
GGGCAATCTCGGTTGTCCCTTTGTT
NONE
Os.12921.1.S1_at--606--3192Chr11:16776712..16776736 (25 bp)
CAATCTCGGTTGTCCCTTTGTTGGT
NONE
Os.12921.1.S1_at--552--7031Chr04:34189342..34189366 (25 bp)
GTAACAGAAACTTGACCCTATCCGT
LOC_Os04g57770
Os.12921.1.S1_at--414--2491Chr04:34189344..34189368 (25 bp)
AACAGAAACTTGACCCTATCCGTCT
LOC_Os04g57770
Os.12921.1.S1_at--923--1411Chr04:34189347..34189371 (25 bp)
AGAAACTTGACCCTATCCGTCTTGG
LOC_Os04g57770
Os.12921.1.S1_at--292--2051Chr04:34189351..34189375 (25 bp)
ACTTGACCCTATCCGTCTTGGTTGA
LOC_Os04g57770
Os.12921.1.S1_at--308--5811Chr04:34189355..34189379 (25 bp)
GACCCTATCCGTCTTGGTTGATGGG
LOC_Os04g57770
Os.12921.1.S1_at--940--4291Chr04:34189358..34189382 (25 bp)
CCTATCCGTCTTGGTTGATGGGTTT
LOC_Os04g57770
Os.12921.1.S1_at--822--551Chr04:34189361..34189385 (25 bp)
ATCCGTCTTGGTTGATGGGTTTGCT
LOC_Os04g57770
Os.12921.1.S1_at--772--3991Chr04:34189364..34189388 (25 bp)
CGTCTTGGTTGATGGGTTTGCTCCA
LOC_Os04g57770
Os.12921.1.S1_at--699--3611Chr04:34189367..34189391 (25 bp)
CTTGGTTGATGGGTTTGCTCCAATC
LOC_Os04g57770
Target Sequence 
GGGCAATCTCGGTTGTCCCTTTGTTGGTCTAGTGGCAGCCGGTCACGCTTANCGGCGGCCGGTCCGATGCTAGCCTTCTC
CTGGGCTTGTGTGTTGGCGATGTCGGTGTGTGGGTGGTGGTATTTTTTCCTTTTTCCTGTTTACGACCCTCTAGGGTTGT
AATCTTGTAATTTTTTCCTGCTCTATCAATAGAACTTCGCACTGTCTCGTGCGAGTCGTTCAAAAAAAAAAAGTAAAGTA
ACAGAAACTTGACCCTATCCGTCTTGGTTGATGGGTTTGCTCCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis