Browse Element(s) Details


Os.47989.1.S1_at

Description gb:AK119773.1
DB_XREF= gi:37989396
TID=Os.47989.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47989 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-F05, full insert sequence.
FL= gb:AK119773.1 gb:AK059048.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5780010/11NPH3 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57740NANA4+34174089..34174865expressed protein
LOC_Os04g57750Os.5821.1.S1_at10/114+34178051..34179112Plastocyanin-like domain containing protein, expressed
LOC_Os04g57760Os.27395.1.S1_a_at11/114+34181023..34182505expressed protein
LOC_Os04g57760OsAffx.14458.1.S1_x_at11/114+34181023..34182505expressed protein
LOC_Os04g57770Os.12921.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57770OsAffx.4202.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57780OsAffx.26647.1.S1_at10/114+34191367..34194102TPR Domain containing protein, expressed
LOC_Os04g57790Os.49179.1.S1_at11/114+34194379..34196563Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os04g57800Os.47989.1.S1_at10/114+34196864..34201247NPH3 family protein, expressed
LOC_Os04g57810Os.5112.1.S1_at11/114+34204464..34207169expressed protein
LOC_Os04g57819NANA4+34208924..34209115NA
LOC_Os04g57830Os.50377.1.S1_at9/114+34217596..34219647expressed protein
LOC_Os04g57840Os.52864.1.S1_at11/114+34221269..34225011transposon protein, putative, unclassified, expressed
LOC_Os04g57850Os.54727.1.S1_s_at11/114+34225770..34227752AMP-binding enzyme family protein, expressed
LOC_Os04g57850Os.19444.1.S1_at4/114+34225770..34227752AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47989.1.S1_at--1011--8171Chr04:34197428..34197452 (25 bp)
GGAAGATCATCGTCAGCGGCAGCCG
LOC_Os04g57800
Os.47989.1.S1_at--253--1331Chr04:34197213..34197237 (25 bp)
AGAGGCTTGCCTAGGCTGTGCTAAT
LOC_Os04g57800
Os.47989.1.S1_at--1131--6411Chr04:34197055..34197079 (25 bp)
GATCTACTGCATTGATTGGGCTCTC
LOC_Os04g57800
Os.47989.1.S1_at--898--8811Chr04:34197043..34197067 (25 bp)
TGATTGGGCTCTCCCTTTTGTTTTT
LOC_Os04g57800
Os.47989.1.S1_at--85--10271Chr04:34197022..34197046 (25 bp)
TTTTTCGTTTTGTGTCTTGCGTTGG
LOC_Os04g57800
Os.47989.1.S1_at--473--7991Chr04:34196956..34196980 (25 bp)
GGATGTAAATTTCTTTTTTCACCAT
LOC_Os04g57800
Os.47989.1.S1_at--409--10371Chr04:34196943..34196967 (25 bp)
TTTTTTCACCATTGTCCCTTTGCTG
LOC_Os04g57800
Os.47989.1.S1_at--407--4991Chr04:34196919..34196943 (25 bp)
GCATGCTTTCTTTCTTCTGTTCTTT
LOC_Os04g57800
Os.47989.1.S1_at--510--3651Chr04:34196906..34196930 (25 bp)
CTTCTGTTCTTTTGCTGTAACTTTA
LOC_Os04g57800
Os.47989.1.S1_at--192--6531Chr04:34196877..34196901 (25 bp)
GATTTGGTCCATAATTACAGTGCAG
LOC_Os04g57800
Os.47989.1.S1_at--1102--131Chr04:34196864..34196888 (25 bp)
ATTACAGTGCAGCTTTTGGACGTAC
NONE
Target Sequence 
GGAAGATCATCGTCAGCGGCAGCCGCGCCCGGAGCGTGGACCTGGACGCCATGGACGAGAAGGAGCTGCTCAAGCTGAAC
CTGCAGAAGATGCAGAATCGGGTGGTGGAGCTGGAGAGAGCGTGCAAGGAGATGCGAGGGCAGATGTCCAAGATGGCCAA
GGGCGGCAGGCCGTCGTCGTCGTTCGGCGCCGCCGCNTGCCATCAAACCGGCGNTAGAGGCTTGCCTAGGCTGTGCTAAT
GATGGATCAAGCAGTAATACGTCTTCTTCTTCTTTGAATTCTTCTTTTTGTTGGTCAAGATTTGCCACCACATCACATAG
GGGCATTTAACTACATAGCTCGCCTTAATTTTTCACCTGTAAATTAAGTTGATGATCTACTGCATTGATTGGGCTCTCCC
TTTTGTTTTTTCGTTTTGTGTCTTGCGTTGGCGGTGTGAGTAAGATAGATGAAGATGAGCAAGATTGACAGGGGATGTAA
ATTTCTTTTTTCACCATTGTCCCTTTGCTGCATGCTTTCTTTCTTCTGTTCTTTTGCTGTAACTTTAAGGTGATTTGGTC
CATAATTACAGTGCAGCTTTTGGACGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis