Browse Element(s) Details


Os.52864.1.S1_at

Description gb:AK069645.1
DB_XREF= gi:32979669
TID=Os.52864.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023027O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027O16, full insert sequence.
FL= gb:AK069645.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5784011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57790Os.49179.1.S1_at11/114+34194379..34196563Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os04g57800Os.47989.1.S1_at10/114+34196864..34201247NPH3 family protein, expressed
LOC_Os04g57810Os.5112.1.S1_at11/114+34204464..34207169expressed protein
LOC_Os04g57819NANA4+34208924..34209115NA
LOC_Os04g57830Os.50377.1.S1_at9/114+34217596..34219647expressed protein
LOC_Os04g57840Os.52864.1.S1_at11/114+34221269..34225011transposon protein, putative, unclassified, expressed
LOC_Os04g57850Os.54727.1.S1_s_at11/114+34225770..34227752AMP-binding enzyme family protein, expressed
LOC_Os04g57850Os.19444.1.S1_at4/114+34225770..34227752AMP-binding enzyme family protein, expressed
LOC_Os04g57860Os.50125.1.S1_at11/114+34231500..34235279Glycosyl hydrolase family 9 protein, expressed
LOC_Os04g57870Os.56969.1.S1_at11/114+34238005..34244668expressed protein
LOC_Os04g57870Os.51820.1.S1_at11/114+34238005..34244668expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52864.1.S1_at--171--4191Chr04:34221734..34221758 (25 bp)
CCCTACTTCGGCATCGACATGTGCA
LOC_Os04g57840
Os.52864.1.S1_at--1034--2651Chr04:34221569..34221593 (25 bp)
AAGCCTCCCATCTGCATGAAATTCC
LOC_Os04g57840
Os.52864.1.S1_at--67--9251Chr04:34221491..34221515 (25 bp)
TCCTAGCTACCATGCAGCTGATCGA
LOC_Os04g57840
Os.52864.1.S1_at--1064--9031Chr04:34221479..34221503 (25 bp)
TGCAGCTGATCGACGAGCTAGCCAT
LOC_Os04g57840
Os.52864.1.S1_at--953--10151Chr04:34221453..34221477 (25 bp)
TATCTAGCTAGCTCATGACCACTCA
LOC_Os04g57840
Os.52864.1.S1_at--813--8951Chr04:34221420..34221444 (25 bp)
TGACAACTTCATATATAGCTAGCAG
LOC_Os04g57840
Os.52864.1.S1_at--597--131Chr04:34221385..34221409 (25 bp)
ATTAATGTCGTAGCCTCCTTGTGTC
LOC_Os04g57840
Os.52864.1.S1_at--155--8731Chr04:34221364..34221388 (25 bp)
TGTCTTGCTTCCTTTTAGAATCAGA
LOC_Os04g57840
Os.52864.1.S1_at--157--411Chr04:34221345..34221369 (25 bp)
ATCAGATGCCTTTGCTAGTAGCCCG
LOC_Os04g57840
Os.52864.1.S1_at--677--10051Chr04:34221330..34221354 (25 bp)
TAGTAGCCCGCATGCATGCATGTGA
LOC_Os04g57840
Os.52864.1.S1_at--842--9991Chr04:34221295..34221319 (25 bp)
TAGCTACTAGGAACCGAGCAGCAAT
LOC_Os04g57840
Target Sequence 
CCCTACTTCGGCATCGACATGTGCATCGGCAGCCTCATCCGCTTCGTCTGGGACCGCCTCGACGGCGCCAGGGCCAAGGC
GTTCGCTCCCCCCGTCGCGTCGGGCCTCATCTGCGGCGACGGCATCTGGACGCTGCCGCAGTCGGTGCTCGCCCTCGCCG
GTGTCAAGCCTCCCATCTGCATGAAATTCCTCTCCCGGACCACCAACATCAAGGTCGACGCGTTCATCGCCAAGCTCCCC
TCCTCCTAGCTACCATGCAGCTGATCGACGAGCTAGCCATCTATCTAGCTAGCTCATGACCACTCACTCAACCATGACAA
CTTCATATATAGCTAGCAGTAGCACATACATTAATGTCGTAGCCTCCTTGTGTCTTGCTTCCTTTTAGAATCAGATGCCT
TTGCTAGTAGCCCGCATGCATGCATGTGACACATATAAATAGCTACTAGGAACCGAGCAGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis