Browse Element(s) Details


Os.54727.1.S1_s_at

Description gb:AK106615.1
DB_XREF= gi:32991824
TID=Os.54727.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54727 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-H10, full insert sequence.
FL= gb:AK106615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5785011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57800Os.47989.1.S1_at10/114+34196864..34201247NPH3 family protein, expressed
LOC_Os04g57810Os.5112.1.S1_at11/114+34204464..34207169expressed protein
LOC_Os04g57819NANA4+34208924..34209115NA
LOC_Os04g57830Os.50377.1.S1_at9/114+34217596..34219647expressed protein
LOC_Os04g57840Os.52864.1.S1_at11/114+34221269..34225011transposon protein, putative, unclassified, expressed
LOC_Os04g57850Os.54727.1.S1_s_at11/114+34225770..34227752AMP-binding enzyme family protein, expressed
LOC_Os04g57850Os.19444.1.S1_at4/114+34225770..34227752AMP-binding enzyme family protein, expressed
LOC_Os04g57860Os.50125.1.S1_at11/114+34231500..34235279Glycosyl hydrolase family 9 protein, expressed
LOC_Os04g57870Os.56969.1.S1_at11/114+34238005..34244668expressed protein
LOC_Os04g57870Os.51820.1.S1_at11/114+34238005..34244668expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54727.1.S1_s_at--95--2771Chr04:34226003..34226027 (25 bp)
AAGACGGTGATCTTCCGCGACGAGT
LOC_Os04g57850
Os.54727.1.S1_s_at--698--5751Chr04:34226001..34226025 (25 bp)
GACGGTGATCTTCCGCGACGAGTTA
LOC_Os04g57850
Os.54727.1.S1_s_at--19--7411Chr04:34225997..34226021 (25 bp)
GTGATCTTCCGCGACGAGTTACCGA
LOC_Os04g57850
Os.54727.1.S1_s_at--698--8831Chr04:34225996..34226020 (25 bp)
TGATCTTCCGCGACGAGTTACCGAA
LOC_Os04g57850
Os.54727.1.S1_s_at--409--431Chr04:34225994..34226018 (25 bp)
ATCTTCCGCGACGAGTTACCGAAGA
LOC_Os04g57850
Os.54727.1.S1_s_at--851--10651Chr04:34225991..34226015 (25 bp)
TTCCGCGACGAGTTACCGAAGACGT
LOC_Os04g57850
Os.54727.1.S1_s_at--889--5751Chr04:34225985..34226009 (25 bp)
GACGAGTTACCGAAGACGTCCACCG
LOC_Os04g57850
Os.54727.1.S1_s_at--840--1311Chr04:34225921..34225945 (25 bp)
AGATGGGGCCCACCACGGGCACCAA
LOC_Os04g57850
Os.54727.1.S1_s_at--599--3271Chr04:34225887..34225911 (25 bp)
CAACAGTAAAATGTAGCGGCATCTA
LOC_Os04g57850
Os.54727.1.S1_s_at--172--8271Chr04:34225778..34225802 (25 bp)
GGCAGAGGCTGATGCATTCCGCATT
LOC_Os04g57850
Os.54727.1.S1_s_at--653--3431Chr04:34225776..34225800 (25 bp)
CAGAGGCTGATGCATTCCGCATTGT
LOC_Os04g57850
Target Sequence 
AAGACGGTGATCTTCCGCGACGAGTTACCGAAGACGTCCACCGGGAANATCCANAAGTACGTGCTCCGGAATATCGCCAA
GGAGATGGGGCCCACCACGGGCACCAACACCAAACNCAACAGTAAAATGTAGCGGCATCTANCCNAGCANATGTGGNACT
TGNTTTTTAGCGTCGTCGTCGTNTTNTTCACTCGGANANANTCACANANCANAAATGTCTGGNGCAGGCAGAGGCTGATG
CATTCCGCATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54727.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis