Browse Element(s) Details


Os.19444.1.S1_at

Description gb:BI812716
DB_XREF= gi:16578621
DB_XREF=F011C11
CLONE=F011C11
TID=Os.19444.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.19444 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_197138.1 (A.thaliana) AMP-binding protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g578504/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57800Os.47989.1.S1_at10/114+34196864..34201247NPH3 family protein, expressed
LOC_Os04g57810Os.5112.1.S1_at11/114+34204464..34207169expressed protein
LOC_Os04g57819NANA4+34208924..34209115NA
LOC_Os04g57830Os.50377.1.S1_at9/114+34217596..34219647expressed protein
LOC_Os04g57840Os.52864.1.S1_at11/114+34221269..34225011transposon protein, putative, unclassified, expressed
LOC_Os04g57850Os.54727.1.S1_s_at11/114+34225770..34227752AMP-binding enzyme family protein, expressed
LOC_Os04g57850Os.19444.1.S1_at4/114+34225770..34227752AMP-binding enzyme family protein, expressed
LOC_Os04g57860Os.50125.1.S1_at11/114+34231500..34235279Glycosyl hydrolase family 9 protein, expressed
LOC_Os04g57870Os.56969.1.S1_at11/114+34238005..34244668expressed protein
LOC_Os04g57870Os.51820.1.S1_at11/114+34238005..34244668expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19444.1.S1_at--282--2331Chr04:34225959..34225982 (24 bp)
AAAGATCCAGAAGTACGTGCTCCGG
LOC_Os04g57850
Os.19444.1.S1_at--497--751Chr04:34225877..34225901 (25 bp)
ATGTAGCGGCATCTAGCCAGCAGAT
LOC_Os04g57850
Os.19444.1.S1_at--535--451NONE
ATCTAGCCAGCAGATGTGTCACTTG
NONE
Os.19444.1.S1_at--752--3431NONE
CAGATGTGTCACTTGCTTTTTAGCG
NONE
Os.19444.1.S1_at--741--8731NONE
TGTCACTTGCTTTTTAGCGTCGTCG
NONE
Os.19444.1.S1_at--1064--7191Chr04:34225827..34225851 (25 bp)
GTCGTCTTCTTCACTCGGACAGAGT
LOC_Os04g57850
Os.19444.1.S1_at--1095--9431Chr04:34225813..34225837 (25 bp)
TCGGACAGAGTCACAGAGCAGAAAT
LOC_Os04g57850
Os.19444.1.S1_at--363--9071Chr04:34225766..34225790 (25 bp)
TGCATTCCGCATTGTCATGGCATGG
NONE
Os.19444.1.S1_at--852--91NONE
ATTCCGCATTGTCATGGCATGGTAT
NONE
Os.19444.1.S1_at--659--8271NONE
GGCATGGTATGTTGGCCTGTTTTTT
NONE
Os.19444.1.S1_at--242--7431NONE
GTGTTTAGATGCACCGATAATTTTT
NONE
Target Sequence 
AAAGATCCAGAAGTACGTGCTCCGGAATATCGCNCANGGAGATGGGGCCCACCACGGGCACCAACACCAACCGCAACAGT
AAAATGTAGCGGCATCTAGCCAGCAGATGTGTCACTTGCTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTTCTTCACTCGG
ACAGAGTCACAGAGCAGAAATGCCTGGTGCAGGCAGAGGCTGATGCATTCCGCATTGTCATGGCATGGTATGTTGGCCTG
TTTTTTTTTTTTTTGGGGGGGGTGTTTAGATGCACCGATAATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis