Browse Element(s) Details


OsAffx.4202.1.S1_at

Description tigr:9632.m05643
TID=OsAffx.4202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5777011/11expressed protein
LOC_Os04g335801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57730OsAffx.4201.1.S1_at11/114+34163604..34168701Uracil-DNA glycosylase, putative, expressed
LOC_Os04g57740NANA4+34174089..34174865expressed protein
LOC_Os04g57750Os.5821.1.S1_at10/114+34178051..34179112Plastocyanin-like domain containing protein, expressed
LOC_Os04g57760Os.27395.1.S1_a_at11/114+34181023..34182505expressed protein
LOC_Os04g57760OsAffx.14458.1.S1_x_at11/114+34181023..34182505expressed protein
LOC_Os04g57770Os.12921.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57770OsAffx.4202.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57780OsAffx.26647.1.S1_at10/114+34191367..34194102TPR Domain containing protein, expressed
LOC_Os04g57790Os.49179.1.S1_at11/114+34194379..34196563Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os04g57800Os.47989.1.S1_at10/114+34196864..34201247NPH3 family protein, expressed
LOC_Os04g57810Os.5112.1.S1_at11/114+34204464..34207169expressed protein
LOC_Os04g57819NANA4+34208924..34209115NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4202.1.S1_at--1146--5811Chr04:34188174..34188198 (25 bp)
GACCGGCCAGCATACCGACGACAGT
LOC_Os04g57770
OsAffx.4202.1.S1_at--30--4411Chr04:34188179..34188203 (25 bp)
GCCAGCATACCGACGACAGTGTGCA
LOC_Os04g57770
OsAffx.4202.1.S1_at--259--4111Chr04:34188192..34188216 (25 bp)
CGACAGTGTGCAGCCGGGTGTGGAG
LOC_Os04g57770
OsAffx.4202.1.S1_at--587--8672Chr04:34188241..34188265 (25 bp)
TGTGTGGGCGCAGCGTTGGCAGCGG
LOC_Os04g57770
OsAffx.4202.1.S1_at--698--10851Chr04:34188256..34188280 (25 bp)
TTGGCAGCGGGACCCGCGTGAGAGA
LOC_Os04g57770
OsAffx.4202.1.S1_at--239--6011Chr04:34188275..34188299 (25 bp)
GAGAGACGCGGCTTGAGGCCGGCAC
LOC_Os04g57770
OsAffx.4202.1.S1_at--1145--5351Chr04:34188305..34188329 (25 bp)
GAAGACAGCGGCATTGGTCCCTGTG
LOC_Os04g57770
OsAffx.4202.1.S1_at--723--1411Chr04:34188307..34188331 (25 bp)
AGACAGCGGCATTGGTCCCTGTGCG
LOC_Os04g57770
OsAffx.4202.1.S1_at--761--4051Chr04:34188354..34188378 (25 bp)
CGATGACGGCGGTGCCTCCCCAGAT
LOC_Os04g57770
OsAffx.4202.1.S1_at--791--5131Chr04:34188555..34188579 (25 bp)
GCAACAGTGAAGTGGCCGCTAGCAG
LOC_Os04g57770
OsAffx.4202.1.S1_at--631--1531Chr04:34188575..34188599 (25 bp)
AGCAGTGGCGGTGGCTCGCGGAGAC
LOC_Os04g57770
Target Sequence 
GACCGGCCAGCATACCGACGACAGTGTGCAGCCGGGTGTGGAGGCGGGGAAGAAAGAGACCGGCGGCTGTGTGGGCGCAG
CGTTGGCAGCGGGACCCGCGTGAGAGACGCGGCTTGAGGCCGGCACGGCGCGAAGACAGCGGCATTGGTCCCTGTGCGGC
GACGGCGCGGTGCTCGGCGGCGATGACGGCGGTGCCTCCCCAGATCCGCGCCTCTCGACCGGATCTAGAGGGTGGTCGGC
TGTGGTGGTCGGCGACGGCGGTCGACTTGCGACAGCTGGTGACGGCAGTTGGCAACGGCGGCGACGGGTGGTTGCGGCAG
TTGGCGGCGGCGACGTCGGCCGACGACGCCGGCGGAGGACTTGGCGGCGGCGTGGCGGAGGGCAACAGTGAAGTGGCCGC
TAGCAGTGGCGGTGGCTCGCGGAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis