Browse Element(s) Details


OsAffx.26647.1.S1_at

Description tigr:9632.m05644
TID=OsAffx.26647.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5778010/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57730OsAffx.4201.1.S1_at11/114+34163604..34168701Uracil-DNA glycosylase, putative, expressed
LOC_Os04g57740NANA4+34174089..34174865expressed protein
LOC_Os04g57750Os.5821.1.S1_at10/114+34178051..34179112Plastocyanin-like domain containing protein, expressed
LOC_Os04g57760Os.27395.1.S1_a_at11/114+34181023..34182505expressed protein
LOC_Os04g57760OsAffx.14458.1.S1_x_at11/114+34181023..34182505expressed protein
LOC_Os04g57770Os.12921.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57770OsAffx.4202.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57780OsAffx.26647.1.S1_at10/114+34191367..34194102TPR Domain containing protein, expressed
LOC_Os04g57790Os.49179.1.S1_at11/114+34194379..34196563Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os04g57800Os.47989.1.S1_at10/114+34196864..34201247NPH3 family protein, expressed
LOC_Os04g57810Os.5112.1.S1_at11/114+34204464..34207169expressed protein
LOC_Os04g57819NANA4+34208924..34209115NA
LOC_Os04g57830Os.50377.1.S1_at9/114+34217596..34219647expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26647.1.S1_at--683--9071Chr04:34193745..34193769 (25 bp)
TGCTCGGCGACTCCGGATTCGACGC
LOC_Os04g57780
OsAffx.26647.1.S1_at--941--2671Chr04:34193650..34193673 (24 bp)
AAGCGGAAGCCCTCCTGACTGAGGC
LOC_Os04g57780
OsAffx.26647.1.S1_at--673--9271Chr04:34193465..34193661 (25 bp)
TCCTGACTGAGGCTATCGAGATGAA
LOC_Os04g57780
OsAffx.26647.1.S1_at--55--1311Chr04:34193447..34193471 (25 bp)
AGATGAATGCTGGTGGCGGTCTCCA
LOC_Os04g57780
OsAffx.26647.1.S1_at--675--4671Chr04:34193432..34193456 (25 bp)
GCGGTCTCCACTTGGCGTACAGAAG
LOC_Os04g57780
OsAffx.26647.1.S1_at--931--2131Chr04:34193239..34193438 (25 bp)
ACAGAAGCAGGTCTAGGGCTAGATT
LOC_Os04g57780
OsAffx.26647.1.S1_at--802--8211Chr04:34193206..34193230 (25 bp)
GGAATATCACTGGTGCGCTTGCTGA
LOC_Os04g57780
OsAffx.26647.1.S1_at--855--3331Chr04:34193199..34193223 (25 bp)
CACTGGTGCGCTTGCTGATGCCGAG
LOC_Os04g57780
OsAffx.26647.1.S1_at--1008--2811Chr04:34193165..34193189 (25 bp)
AAGATTGCTCCGAAATTTCCTCAGG
LOC_Os04g57780
OsAffx.26647.1.S1_at--1024--5591NONE
GAAATTTCCTCAGGCTCACTTGTCA
NONE
OsAffx.26647.1.S1_at--756--4371Chr04:34191684..34191797 (25 bp)
CCAAGTCGTTCAGGGCTCGTGTACA
LOC_Os04g57780
Target Sequence 
TGCTCGGCGACTCCGGATTCGACGCGGCGGCGGGGCTCGCCGCGCTCGCGGCGCGTGAGAAGGCGGAGGCCGCCCTCGAG
AAGGGTGGCGCCGCCGAAGCGGAAGCCCTCCTGACTGAGGCTATCGAGATGAATGCTGGTGGCGGTCTCCACTTGGCGTA
CAGAAGCAGGTCTAGGGCTAGATTGTCAATGGGGAATATCACTGGTGCGCTTGCTGATGCCGAGGAAGCAACAAAGATTG
CTCCGAAATTTCCTCAGGCTCACTTGTCACGAGGCGATGCTCTGTTTGCAATGGAAGAGTACCGAGCTGCAGAGGATGCT
TATGCTGATGCCCTGGACCTTGATCCATCCATTCGCCGGACCAAGTCGTTCAGGGCTCGTGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis