Browse Element(s) Details


Os.8444.1.S1_s_at

Description gb:AK068390.1
DB_XREF= gi:32978408
TID=Os.8444.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013147K07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147K07, full insert sequence.
FL= gb:AK068390.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5770011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57650Os.23656.1.A1_at9/114+34102288..34105685expressed protein
LOC_Os04g57660Os.52985.1.S1_at11/114+34110677..34113143Leucine Rich Repeat family protein, expressed
LOC_Os04g57670Os.53857.1.S1_at11/114+34114436..34117606pentatricopeptide, putative, expressed
LOC_Os04g57670Os.53857.1.S2_at10/114+34114436..34117606pentatricopeptide, putative, expressed
LOC_Os04g57680Os.46068.1.S1_at11/114+34119412..34122849expressed protein
LOC_Os04g57690Os.51223.1.S1_at11/114+34123545..34126566expressed protein
LOC_Os04g57700Os.8444.1.S1_a_at11/114+34127493..34133264expressed protein
LOC_Os04g57700Os.8444.1.S1_s_at11/114+34127493..34133264expressed protein
LOC_Os04g57700Os.36208.1.S1_at8/114+34127493..34133264expressed protein
LOC_Os04g57710NANA4+34134913..34135389hypothetical protein
LOC_Os04g57720Os.24952.1.S1_at10/114+34156916..34158030Two-component response regulator ARR3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8444.1.S1_s_at--933--4551Chr04:34127981..34128005 (25 bp)
GCCCAAGTTTCGTGTACCATGAAGA
LOC_Os04g57700
Os.8444.1.S1_s_at--353--1471Chr04:34127959..34127983 (25 bp)
AGAAGGCTAAGTTGCCGCACCGAGT
LOC_Os04g57700
Os.8444.1.S1_s_at--50--8931Chr04:34127935..34127959 (25 bp)
TGAGCGAGCGCCAGGAACAGTCCCG
LOC_Os04g57700
Os.8444.1.S1_s_at--48--1111Chr04:34127879..34127903 (25 bp)
AGTGATCTGATTGTCTGCCCGCCTG
LOC_Os04g57700
Os.8444.1.S1_s_at--672--9971Chr04:34127852..34127876 (25 bp)
TACCTGCCCGAGTTGAAAGCTGTTG
LOC_Os04g57700
Os.8444.1.S1_s_at--1135--2331Chr04:34127827..34127851 (25 bp)
AAAGCACCGGAAATTGAGGCCTGCA
LOC_Os04g57700
Os.8444.1.S1_s_at--163--5891Chr04:34127774..34127798 (25 bp)
GAGCGAGTTGCTGTTGTTGTACCTG
LOC_Os04g57700
Os.8444.1.S1_s_at--1003--6971Chr04:34127756..34127780 (25 bp)
GTACCTGGTTGGGTATCCAGCGAAA
LOC_Os04g57700
Os.8444.1.S1_s_at--794--331Chr04:34127728..34127752 (25 bp)
ATACACCAGACACTTGATTCGGGAG
LOC_Os04g57700
Os.8444.1.S1_s_at--151--6231Chr04:34127668..34127692 (25 bp)
GATGGCTGGAGGTGTTCCCCTGTCC
LOC_Os04g57700
Os.8444.1.S1_s_at--1013--10251Chr04:34127640..34127664 (25 bp)
TTTGTTCTCTCTGATTGGTCGTCAA
LOC_Os04g57700
Target Sequence 
GCCCAAGTTTCGTGTACCATGAAGAAGGCTAAGTTGCCGCACCGAGTGAGCGAGCGCCAGGAACAGTCCCGGCGTTTCTT
TCTTCCAGCGAGATTGTTTTCCAGTGATCTGATTGTCTGCCCGCCTGCCTACCTGCCCGAGTTGAAAGCTGTTGAAAGCA
CCGGAAATTGAGGCCTGCAGCTGCTTGCGGGGGTATGCGCAACGGGCGAGCGAGTTGCTGTTGTTGTACCTGGTTGGGTA
TCCAGCGAAATGAATACACCAGACACTTGATTCGGGAGTGAGTAACACGCACACAAGTGACTGTAAATATTTGGATGGCT
GGAGGTGTTCCCCTGTCCTGTTTTGTTCTCTCTGATTGGTCGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8444.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis