Browse Element(s) Details


Os.51223.1.S1_at

Description gb:AK062248.1
DB_XREF= gi:32972266
TID=Os.51223.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51223 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-F09, full insert sequence.
FL= gb:AK065014.1 gb:AK062248.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5769011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57640Os.53757.1.S1_at11/114+34095289..34101017Poly polymerase catalytic domain containing protein, expressed
LOC_Os04g57650Os.23656.1.A1_at9/114+34102288..34105685expressed protein
LOC_Os04g57660Os.52985.1.S1_at11/114+34110677..34113143Leucine Rich Repeat family protein, expressed
LOC_Os04g57670Os.53857.1.S1_at11/114+34114436..34117606pentatricopeptide, putative, expressed
LOC_Os04g57670Os.53857.1.S2_at10/114+34114436..34117606pentatricopeptide, putative, expressed
LOC_Os04g57680Os.46068.1.S1_at11/114+34119412..34122849expressed protein
LOC_Os04g57690Os.51223.1.S1_at11/114+34123545..34126566expressed protein
LOC_Os04g57700Os.8444.1.S1_a_at11/114+34127493..34133264expressed protein
LOC_Os04g57700Os.8444.1.S1_s_at11/114+34127493..34133264expressed protein
LOC_Os04g57700Os.36208.1.S1_at8/114+34127493..34133264expressed protein
LOC_Os04g57710NANA4+34134913..34135389hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51223.1.S1_at--473--6351Chr04:34125601..34125625 (25 bp)
GATCCAACTCAGTGCTATGCGTTAA
LOC_Os04g57690
Os.51223.1.S1_at--262--1971Chr04:34125771..34125795 (25 bp)
ACTGTAATGCCCTCAATGGACCACG
LOC_Os04g57690
Os.51223.1.S1_at--52--3691Chr04:34125840..34125864 (25 bp)
CTATTTCTCATTCCGATGGCAGCAT
LOC_Os04g57690
Os.51223.1.S1_at--225--3951Chr04:34125901..34125925 (25 bp)
CGGCAGCCCTATCGTGAAAGACTTA
LOC_Os04g57690
Os.51223.1.S1_at--947--1751Chr04:34125943..34125967 (25 bp)
ACCTGCGGAAAGTTCTGTTGCTACT
LOC_Os04g57690
Os.51223.1.S1_at--736--10451Chr04:34125971..34125995 (25 bp)
TTACCATCTGCCGAAGAACTACCTG
LOC_Os04g57690
Os.51223.1.S1_at--70--1151Chr04:34126001..34126025 (25 bp)
AGTCCTATTGCCAACAACTTACCAG
LOC_Os04g57690
Os.51223.1.S1_at--833--1351Chr04:34126045..34126069 (25 bp)
AGAGAGTCCTGTTGCCAGTAGCACA
LOC_Os04g57690
Os.51223.1.S1_at--1016--3531Chr04:34126124..34126148 (25 bp)
CATCCTGCCAGTTGATCTTTTGTAA
LOC_Os04g57690
Os.51223.1.S1_at--525--4871Chr04:34126179..34126203 (25 bp)
GCTTTTAAATGGCTCACGGTGGTTT
LOC_Os04g57690
Os.51223.1.S1_at--635--10351Chr04:34126202..34126226 (25 bp)
TTTATAGTTTGCTGCACTGCTCGTT
LOC_Os04g57690
Target Sequence 
GATCCAACTCAGTGCTATGCGTTAATATGTGGCAACTGCCATATGCATAATGGTCTTGCAAGGAAAGAGGACTTTGCATT
CATTACNTATTACTGCCCGCACTGTAATGCCCTCAATGGACCACGGCAGCATGATGAGCATGAAATGGTATCTCCTGGTA
AGGAGACTCCTATTTCTCATTCCGATGGCAGCATTGGCCACGCCGGTGCAAACCTTGCAAACTCAGGTGCCGGCAGCCCT
ATCGTGAAAGACTTACCCACGGTTGAAGAATTACCTGCGGAAAGTTCTGTTGCTACTAACTTACCATCTGCCGAAGAACT
ACCTGCAGAAAGTCCTATTGCCAACAACTTACCAGCAGTTGAAGAATTAGCTGCAGAGAGTCCTGTTGCCAGTAGCACAC
CTGCTATTGAAGAACTACCTGCAGAAGGTACCGTGGAGAAGGCAAGTATTGATCATCCTGCCAGTTGATCTTTTGTAAAG
TAACTGCATATGTATTTGTTCATGGAGGGCTTTTAAATGGCTCACGGTGGTTTTATAGTTTGCTGCACTGCTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51223.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis