Browse Element(s) Details


Os.25125.1.A1_at

Description gb:AK073842.1
DB_XREF= gi:32983865
TID=Os.25125.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067C09, full insert sequence.
FL= gb:AK073842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5749010/11beta-Ig-H3 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57450Os.53349.1.S1_at11/113+32690677..32694579Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os03g57460Os.22627.1.S1_at10/113+32695971..32699491beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57470NANA3+32702094..32705234retrotransposon protein, putative, unclassified
LOC_Os03g57480NANA3+32705894..32711984retrotransposon protein, putative, unclassified
LOC_Os03g57490Os.23180.1.S1_at11/113+32717322..32721635beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57490Os.25125.1.A1_at10/113+32717322..32721635beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57500Os.26475.1.S1_at9/113+32722460..32726254zinc finger family protein, putative, expressed
LOC_Os03g57510OsAffx.13524.1.S1_at11/113+32730579..32733924Calcium-dependent protein kinase, isoform AK1, putative
LOC_Os03g57520OsAffx.13525.1.S1_x_at11/113+32736937..32737440VQ motif family protein, expressed
LOC_Os03g57530Os.8416.1.S1_at10/113+32739529..32741924expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007155biological_processcell adhesion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25125.1.A1_at--270--9311Chr03:32720254..32720278 (25 bp)
TCCCGCCGGCTGAGACGAAGACGAA
LOC_Os03g57490
Os.25125.1.A1_at--695--2391NONE
AAACACCGGAGAGGCAAATTGCTAG
NONE
Os.25125.1.A1_at--867--8571Chr03:32719383..32719407 (25 bp)
TGGTTGGCATCCTTGGCCAGCGATC
LOC_Os03g57490
Os.25125.1.A1_at--685--10851Chr03:32719371..32719395 (25 bp)
TTGGCCAGCGATCGCAATTCACACG
LOC_Os03g57490
Os.25125.1.A1_at--372--3151Chr03:32719356..32719380 (25 bp)
AATTCACACGCTGCCAGTAGACAGG
LOC_Os03g57490
Os.25125.1.A1_at--926--8811Chr03:32719317..32719341 (25 bp)
TGATACTGAAACACGGTCTAGAGGT
LOC_Os03g57490
Os.25125.1.A1_at--1113--7551Chr03:32719278..32719302 (25 bp)
GGGCCATCCACATATGGTTGTTTTA
LOC_Os03g57490
Os.25125.1.A1_at--234--10191Chr03:32719203..32719227 (25 bp)
TATAGGTGTGTCTTACGGCAGGAAA
LOC_Os03g57490
Os.25125.1.A1_at--60--8791Chr03:32719133..32719157 (25 bp)
TGTTTTGTTCGTTGTTCTTGCTACT
LOC_Os03g57490
Os.25125.1.A1_at--1067--6731Chr03:32719120..32719144 (25 bp)
GTTCTTGCTACTGTTTCTGACAGAA
LOC_Os03g57490
Os.25125.1.A1_at--512--531Chr03:32719077..32719101 (25 bp)
ATCGCAGCATCCCATGGGTTAAAAG
LOC_Os03g57490
Target Sequence 
TCCCGCCGGCTGAGACGAAGACGAAGACGAAGCCGGCCACCGCCCGGATCAGGACGGCGCCCGCTATCACCGGCGTCAGC
AAGATTAAACACCGGAGAGGCAAATTGCTAGAAGCAGCATGCCAAATGGTTGGCATCCTTGGCCAGCGATCGCAATTCAC
ACGCTGCCAGTAGACAGGAAAGATTGATCTCATGATACTGAAACACGGTCTAGAGGTGATAGACTCTGCTGGGGCCATCC
ACATATGGTTGTTTTATTTTGTTTAAAAATGAGTAGTAAATCAGGTGGGCAATATAAGCAGGTGTGTATAGGTGTGTCTT
ACGGCAGGAAAAAAAATCATACTTGAACACCAAAATCTTCTGTGTATAGGAGGGTTTGTTTTGTTCGTTGTTCTTGCTAC
TGTTTCTGACAGAATCTTAATCTTGAGTAAANATCGCAGCATCCCATGGGTTAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25125.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis