Browse Element(s) Details


Os.25211.1.S1_at

Description gb:AK059050.1
DB_XREF= gi:32969068
TID=Os.25211.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25211 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-E08, full insert sequence.
FL= gb:AK059050.1 gb:AK099318.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4823011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48190OsAffx.15143.1.S1_at11/115+27533800..27536070hypothetical protein
LOC_Os05g48190OsAffx.1263.1.S1_at1/115+27533800..27536070hypothetical protein
LOC_Os05g48200Os.27638.1.S1_at11/115+27547570..27553180Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os05g48210Os.27660.1.S1_at11/115+27554824..27555702expressed protein
LOC_Os05g48220Os.39014.1.S1_at8/115+27557400..2755946460S ribosomal protein L33-B, putative, expressed
LOC_Os05g48230Os.25211.1.S1_at11/115+27559844..27564573expressed protein
LOC_Os05g48240Os.8710.1.S1_at11/115+27564708..27570395Dynamin-related protein 1A, putative, expressed
LOC_Os05g48250NANA5+27574407..27575238hypothetical protein
LOC_Os05g48260OsAffx.27365.1.S1_at11/115+27577574..27581528condensation domain-containing protein, putative, expressed
LOC_Os05g48270Os.25562.1.S1_at11/115+27583058..27586077auxin-responsive protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25211.1.S1_at--377--1111Chr05:27563566..27563590 (25 bp)
AGTGAAAACGCCTCGAATGTTGATC
LOC_Os05g48230
Os.25211.1.S1_at--890--2991Chr05:27563581..27563605 (25 bp)
AATGTTGATCGTTCGACCTTCGCGA
LOC_Os05g48230
Os.25211.1.S1_at--18--1751Chr05:27563596..27563620 (25 bp)
ACCTTCGCGATGTTCATGCAACCAG
LOC_Os05g48230
Os.25211.1.S1_at--205--6631Chr05:27564080..27564104 (25 bp)
GTTGATCCCACCGAATGGAACTCTT
LOC_Os05g48230
Os.25211.1.S1_at--709--10251Chr05:27564196..27564220 (25 bp)
TTTGTCCGTTTCGTACTAGCAGTGA
LOC_Os05g48230
Os.25211.1.S1_at--1116--5571Chr05:27564219..27564243 (25 bp)
GAAATCGTCAGTGCAACCTGGACAA
LOC_Os05g48230
Os.25211.1.S1_at--36--2571Chr05:27564248..27564272 (25 bp)
AACTGTTAGGTTCTCTGCGTGTGTT
LOC_Os05g48230
Os.25211.1.S1_at--564--2331Chr05:27564343..27564367 (25 bp)
AAAGCAACAACACCGGTGGCAGCGT
LOC_Os05g48230
Os.25211.1.S1_at--434--5071Chr05:27564361..27564385 (25 bp)
GCAGCGTCACCTTTTCTTGGTTCAG
LOC_Os05g48230
Os.25211.1.S1_at--729--8571Chr05:27564378..27564402 (25 bp)
TGGTTCAGTTTCCACTACACTCATC
LOC_Os05g48230
Os.25211.1.S1_at--1122--2171Chr05:27564394..27564418 (25 bp)
ACACTCATCTTCACCATACTTGATT
LOC_Os05g48230
Target Sequence 
AGTGAAAACGCCTCGAATGTTGATCGTTCGACCTTCGCGATGTTCATGCAACCAGATTGGGATGAAAAGCTCAAGTTTCC
AAGTGAAATTCCGTATCATCAAGAGTTGATCCCACCGAATGGAACTCTTACATTCGGGGAGTATTCAGAAAGATTGGTGA
ACAAGTATTACCAGGGAAAGACATGAAACACTACAATACGCATGCAATTTTCAATTGTTGTTTGTCCGTTTCGTACTAGC
AGTGAAATCGTCAGTGCAACCTGGACAAACTTAACTGTTAGGTTCTCTGCGTGTGTTTTGAACTGGAGATTCGAGCAACC
AATCATAGAAAAAATGTGTCTACTGTAATTGTTTTTTCCTTACGATAAAAGCAACAACACCGGTGGCAGCGTCACCTTTT
CTTGGTTCAGTTTCCACTACACTCATCTTCACCATACTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis