Browse Element(s) Details


OsAffx.15143.1.S1_at

Description tigr:9633.m04493
TID=OsAffx.15143.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4819011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48140Os.49886.1.S1_at10/115+27511055..27515513expressed protein
LOC_Os05g48150Os.3435.1.S1_at10/115+27519142..27522192transposon protein, putative, unclassified, expressed
LOC_Os05g48150Os.3435.2.S1_x_at9/115+27519142..27522192transposon protein, putative, unclassified, expressed
LOC_Os05g48160Os.51473.2.S1_x_at11/115+27522661..27524278ferredoxin, putative, expressed
LOC_Os05g48160Os.51473.1.S1_at11/115+27522661..27524278ferredoxin, putative, expressed
LOC_Os05g48170OsAffx.3852.1.S1_at2/115+27525868..27529530retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g48180OsAffx.27363.1.S1_at11/115+27530196..27531182hypothetical protein
LOC_Os05g48190OsAffx.15143.1.S1_at11/115+27533800..27536070hypothetical protein
LOC_Os05g48190OsAffx.1263.1.S1_at1/115+27533800..27536070hypothetical protein
LOC_Os05g48200Os.27638.1.S1_at11/115+27547570..27553180Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os05g48210Os.27660.1.S1_at11/115+27554824..27555702expressed protein
LOC_Os05g48220Os.39014.1.S1_at8/115+27557400..2755946460S ribosomal protein L33-B, putative, expressed
LOC_Os05g48230Os.25211.1.S1_at11/115+27559844..27564573expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15143.1.S1_at--406--6571Chr05:27533846..27533870 (25 bp)
GATTCGGATCCCACAGTGCGAGAGG
LOC_Os05g48190
OsAffx.15143.1.S1_at--620--2351Chr05:27533916..27533940 (25 bp)
AAAGCTCCGGGAGGTCATAGCACCA
LOC_Os05g48190
OsAffx.15143.1.S1_at--519--8651Chr05:27533941..27533965 (25 bp)
TGGGCTCCGGTACCACCAAAGGTGA
LOC_Os05g48190
OsAffx.15143.1.S1_at--1065--3711Chr05:27534020..27534044 (25 bp)
CTACCTTAGGGCGTGGGAGCTCCGA
LOC_Os05g48190
OsAffx.15143.1.S1_at--863--9811Chr05:27534053..27534077 (25 bp)
TAAAGCCCGATATGCCGGCCGGAGC
LOC_Os05g48190
OsAffx.15143.1.S1_at--802--6431Chr05:27534079..27534103 (25 bp)
GATCATATCTCATGTGCTCTCACAA
LOC_Os05g48190
OsAffx.15143.1.S1_at--649--5431Chr05:27534114..27534138 (25 bp)
GAACCAGGCGCTAGTGGACGTGAAT
LOC_Os05g48190
OsAffx.15143.1.S1_at--267--2552Chr05:27534163..27534187 (25 bp)
AACTCTGACACTGTTGATGGCTGCC
LOC_Os05g48190
OsAffx.15143.1.S1_at--635--8871Chr05:27534177..27534201 (25 bp)
TGATGGCTGCCAAGCGGAGCACGCT
LOC_Os05g48190
OsAffx.15143.1.S1_at--350--3031Chr05:27535585..27535609 (25 bp)
AATCTGGACCGGTGATCCCGAAGAT
LOC_Os05g48190
OsAffx.15143.1.S1_at--523--2431Chr05:27535994..27536018 (25 bp)
AAAACCTCTATGTTCTTACCACACT
LOC_Os05g48190
Target Sequence 
GATTCGGATCCCACAGTGCGAGAGGAGCAGGACCTAAGCAGGCTCCGGATGATGGCCGCCCGGCTCCGGGAAAGCTCCGG
GAGGTCATAGCACCATGGGCTCCGGTACCACCAAAGGTGACTGGGCTCCGAAGCCCAGAGGGGTTCCCAAAGTCTGGAAG
GAGAGCTCCGGAGGCTACCTTAGGGCGTGGGAGCTCCGAGGGGCCCCTAAAGCCCGATATGCCGGCCGGAGCGGATCATA
TCTCATGTGCTCTCACAAGACAAGCCAAGAACCAGGCGCTAGTGGACGTGAATAAATGCGTACTACGCGCCCCAACTAAC
TCTGACACTGTTGATGGCTGCCAAGCGGAGCACGCTATTACCCAGGGGATGCCTTTACCCGGGTTGGGTAACACTAGGAA
ACTTAAAGAAATAATCTGGACCGGTGATCCCGAAGATCACAAGAAAAACCTCTATGTTCTTACCACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis