Browse Element(s) Details


Os.51473.2.S1_x_at

Description gb:AK062890.1
DB_XREF= gi:32972908
TID=Os.51473.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51473 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-E03, full insert sequence.
FL= gb:AK062890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4816011/11ferredoxin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48120NANA5+27501503..27504934hypothetical protein
LOC_Os05g48130NANA5+27505886..27506341hypothetical protein
LOC_Os05g48140Os.49886.1.S1_at10/115+27511055..27515513expressed protein
LOC_Os05g48150Os.3435.1.S1_at10/115+27519142..27522192transposon protein, putative, unclassified, expressed
LOC_Os05g48150Os.3435.2.S1_x_at9/115+27519142..27522192transposon protein, putative, unclassified, expressed
LOC_Os05g48160Os.51473.2.S1_x_at11/115+27522661..27524278ferredoxin, putative, expressed
LOC_Os05g48160Os.51473.1.S1_at11/115+27522661..27524278ferredoxin, putative, expressed
LOC_Os05g48170OsAffx.3852.1.S1_at2/115+27525868..27529530retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g48180OsAffx.27363.1.S1_at11/115+27530196..27531182hypothetical protein
LOC_Os05g48190OsAffx.15143.1.S1_at11/115+27533800..27536070hypothetical protein
LOC_Os05g48190OsAffx.1263.1.S1_at1/115+27533800..27536070hypothetical protein
LOC_Os05g48200Os.27638.1.S1_at11/115+27547570..27553180Glutamate synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51473.2.S1_x_at--1070--5791Chr05:27523929..27524036 (25 bp)
GACCTCGAGTTCGTCGGACCGAAGG
LOC_Os05g48160
Os.51473.2.S1_x_at--859--9251Chr05:27523847..27523871 (25 bp)
TCCTCCGGGACGTCATGGTCGAGAA
LOC_Os05g48160
Os.51473.2.S1_x_at--305--2811Chr05:27523821..27523845 (25 bp)
AAGATCGAGCTCTACGCGGCATATG
LOC_Os05g48160
Os.51473.2.S1_x_at--1091--1591Chr05:27523638..27523661 (24 bp)
AGCTGCGGCACTTGCATCGTCGAGA
LOC_Os05g48160
Os.51473.2.S1_x_at--160--2371Chr05:27523194..27523218 (25 bp)
AAACCGGAGTCATGGAGGCTTGCTT
LOC_Os05g48160
Os.51473.2.S1_x_at--873--8551Chr05:27523182..27523206 (25 bp)
TGGAGGCTTGCTTGTCAGACTATTG
LOC_Os05g48160
Os.51473.2.S1_x_at--189--91Chr05:27522906..27523166 (25 bp)
ATTCCGGCAAGGTTGTCGTCCAACG
LOC_Os05g48160
Os.51473.2.S1_x_at--293--3251Chr05:27522886..27522910 (25 bp)
CAACGTCTGCCCCAGTGGAAAAAAT
LOC_Os05g48160
Os.51473.2.S1_x_at--547--4631Chr05:27522821..27522845 (25 bp)
GCGATCAAGTTGTACTACCTGCTAT
LOC_Os05g48160
Os.51473.2.S1_x_at--311--1771Chr05:27522805..27522829 (25 bp)
ACCTGCTATGCACTGTTGAACACGG
LOC_Os05g48160
Os.51473.2.S1_x_at--629--4992Chr03:11165918..11165938 (21 bp)
GCATGCAATGATTTTTCTCCTGGAA
NONE
Target Sequence 
GACCTCGAGTTCGTCGGACCGAAGGCGGATGCCGATGGGTCGTTCCCGGTGGACCGGGCGGCGGCGGGCAGCGGCGAGAA
GCTCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGGCATATGGGAAGGTGATGAACTGCGGCGGCGGCG
GCAGCTGCGGCACTTGCATCGTCGAGATAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGGTAT
CTGAAGAAGAAACCGGAGTCATGGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCGGCAAGGTTGTCGT
CCAACGTCTGCCCCAGTGGAAAAAATGATTGTAGTGCACACGTGATGCACTAACTGCATGTGATCAGCGATCAAGTTGTA
CTACCTGCTATGCACTGTTGAACACGGAAGCATGCAATGATTTTTCTCCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51473.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis