Browse Element(s) Details


Os.49886.1.S1_at

Description gb:AK119287.1
DB_XREF= gi:37988910
TID=Os.49886.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49886 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-130-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-D01, full insert sequence.
FL= gb:AK119287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4814010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48090NANA5+27483657..27486961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48100NANA5+27488546..27491031transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48110Os.47463.1.S1_x_at5/115+27491286..27493497transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48110Os.14491.2.S1_x_at4/115+27491286..27493497transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48120NANA5+27501503..27504934hypothetical protein
LOC_Os05g48130NANA5+27505886..27506341hypothetical protein
LOC_Os05g48140Os.49886.1.S1_at10/115+27511055..27515513expressed protein
LOC_Os05g48150Os.3435.1.S1_at10/115+27519142..27522192transposon protein, putative, unclassified, expressed
LOC_Os05g48150Os.3435.2.S1_x_at9/115+27519142..27522192transposon protein, putative, unclassified, expressed
LOC_Os05g48160Os.51473.2.S1_x_at11/115+27522661..27524278ferredoxin, putative, expressed
LOC_Os05g48160Os.51473.1.S1_at11/115+27522661..27524278ferredoxin, putative, expressed
LOC_Os05g48170OsAffx.3852.1.S1_at2/115+27525868..27529530retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g48180OsAffx.27363.1.S1_at11/115+27530196..27531182hypothetical protein
LOC_Os05g48190OsAffx.15143.1.S1_at11/115+27533800..27536070hypothetical protein
LOC_Os05g48190OsAffx.1263.1.S1_at1/115+27533800..27536070hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49886.1.S1_at--322--2831Chr05:27511578..27511602 (25 bp)
AAGTTCACAAGTTCTTCTGAGGATT
LOC_Os05g48140
Os.49886.1.S1_at--185--811NONE
ATGGTAAAGTTACATCTCTCTCTCT
NONE
Os.49886.1.S1_at--145--371Chr05:27511468..27511492 (25 bp)
ATAATTGTCTCTCACACTGTTGCTA
LOC_Os05g48140
Os.49886.1.S1_at--221--2171Chr05:27511455..27511479 (25 bp)
ACACTGTTGCTATGCCTGTGAGCAT
LOC_Os05g48140
Os.49886.1.S1_at--886--7431Chr05:27511401..27511425 (25 bp)
GTGTAACAAACATCTGAGGGCCAGT
LOC_Os05g48140
Os.49886.1.S1_at--110--10411Chr05:27511343..27511367 (25 bp)
TTTTGTTGCTGTGTGCAGGCATCGG
LOC_Os05g48140
Os.49886.1.S1_at--458--1331Chr05:27511309..27511333 (25 bp)
AGAGTGCAGTCTTTATAGTGGCCAA
LOC_Os05g48140
Os.49886.1.S1_at--91--3151Chr05:27511273..27511297 (25 bp)
AATTCACCTTTTTAACATTGTCAGC
LOC_Os05g48140
Os.49886.1.S1_at--67--1551Chr05:27511251..27511275 (25 bp)
AGCTCGGTGGTGTGAAGGTAATCTC
LOC_Os05g48140
Os.49886.1.S1_at--38--3431Chr05:27511113..27511137 (25 bp)
CAGACTTCAGTGTGTCCTATGGACA
LOC_Os05g48140
Os.49886.1.S1_at--49--6991Chr05:27511081..27511105 (25 bp)
GTACCTTTTACACTTATTCACTGAA
LOC_Os05g48140
Target Sequence 
AAGTTCACAAGTTCTTCTGAGGATTGGATAAGAATCTGGAGCAAGATGAAATATAGATGGTAAAGTTACATCTCTCTCTC
TCTCTCTCTCTCACTGATTATTTTACTGTAATAATTGTCTCTCACACTGTTGCTATGCCTGTGAGCATGTGACAATATCA
AGTTTCTGCTTTTGTAGGTGTAACAAACATCTGAGGGCCAGTTTAAGGGGACATATATGCTATTTCGCATTAGTTTTTTG
TTGCTGTGTGCAGGCATCGGCGAAGGAGAAGAGTGCAGTCTTTATAGTGGCCAAGGACTTGCCAAAATTCACCTTTTTAA
CATTGTCAGCTCGGTGGTGTGAAGGTAATCTCACTTGAATTAGTATAAGTAGGCAACCATTTACACCTAAACATTAGAAA
CCAGTGATAAGAGGCATCTATTGGGCAAATACTTATATTGCAGGTGAACATTTTTTATGAAATTTCAGACTTCAGTGTGT
CCTATGGACAGAATGTAGTACCTTTTACACTTATTCACTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis