Browse Element(s) Details


Os.3435.2.S1_x_at

Description gb:AJ272423.1
DB_XREF= gi:7160007
TID=Os.3435.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.3435 (NCBI UniGene Cluster)
UG_TITLE=Partial mRNA for putative B regulatory subunit of PP2A (sircs1 gene)
DEF=Oryza sativa partial mRNA for putative B regulatory subunit of PP2A (sircs1 gene).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g481509/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48120NANA5+27501503..27504934hypothetical protein
LOC_Os05g48130NANA5+27505886..27506341hypothetical protein
LOC_Os05g48140Os.49886.1.S1_at10/115+27511055..27515513expressed protein
LOC_Os05g48150Os.3435.1.S1_at10/115+27519142..27522192transposon protein, putative, unclassified, expressed
LOC_Os05g48150Os.3435.2.S1_x_at9/115+27519142..27522192transposon protein, putative, unclassified, expressed
LOC_Os05g48160Os.51473.2.S1_x_at11/115+27522661..27524278ferredoxin, putative, expressed
LOC_Os05g48160Os.51473.1.S1_at11/115+27522661..27524278ferredoxin, putative, expressed
LOC_Os05g48170OsAffx.3852.1.S1_at2/115+27525868..27529530retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g48180OsAffx.27363.1.S1_at11/115+27530196..27531182hypothetical protein
LOC_Os05g48190OsAffx.15143.1.S1_at11/115+27533800..27536070hypothetical protein
LOC_Os05g48190OsAffx.1263.1.S1_at1/115+27533800..27536070hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3435.2.S1_x_at--802--8391Chr05:27521515..27521539 (25 bp)
GGCGCTTTTCATATGGAACAACGAT
LOC_Os05g48150
Os.3435.2.S1_x_at--412--2431Chr05:27521562..27521586 (25 bp)
AAAACCGCCAAATGATCATGCCTAT
LOC_Os05g48150
Os.3435.2.S1_x_at--1029--6431Chr05:27521575..27521599 (25 bp)
GATCATGCCTATCATTGTTCCAGCA
LOC_Os05g48150
Os.3435.2.S1_x_at--702--1311Chr05:27521676..27521700 (25 bp)
AGATGGATGACGTGCTCTTTTCGGC
LOC_Os05g48150
Os.3435.2.S1_x_at--378--1571Chr05:27521775..27521799 (25 bp)
AGCTAGAATCAGCTGCTTCTTTCCA
LOC_Os05g48150
Os.3435.2.S1_x_at--3--10551Chr05:27521791..27521815 (25 bp)
TTCTTTCCAGCCAGTGACGGGCCAT
LOC_Os05g48150
Os.3435.2.S1_x_at--1025--1891Chr05:27521807..27521831 (25 bp)
ACGGGCCATACAGCCGTCCTGGTAG
LOC_Os05g48150
Os.3435.2.S1_x_at--614--5131Chr05:27521846..27521870 (25 bp)
GCAAATTTGATTGCCACCCTTATTT
LOC_Os05g48150
Os.3435.2.S1_x_at--792--1811Chr05:27521861..27521885 (25 bp)
ACCCTTATTTAGCATGTGTTCAGTG
LOC_Os05g48150
Os.3435.2.S1_x_at--458--5691NONE
GACTTCAGACTTCACTATTTTTCCC
NONE
Os.3435.2.S1_x_at--533--10651Chr08:1205080..1205241 (25 bp)
TTCCCTTATTTCTTTTTTATGTCTG
NONE
Target Sequence 
GGCGCTTTTCATATGGAACAACGATAACGTTATTAGCTTNGATTGCACAAAACCGCCAAATGATCATGCCTATCATTGTT
CCAGCATTGGAACATAATAGCCAGAATCATTGGAACCAAGCTGTNCTGAATCTCACAGATAATGTAAAGAAGATGTTTTC
TGAGATGGATGACGTGCTCTTTTCGGCGTGCCTGGTCAAGTACAAGGAGGACGAAGAAANGCAAGCTTCACTGGAATCAA
AGAGGAGGTTAACATGGGAGAAGCTAGAATCAGCTGCTTCTTTCCAGCCAGTGACGGGCCATACAGCCGTCCTGGTAGGC
NGCCAACCCTCAGCAAATTTGATTGCCACCCTTATTTAGCATGTGTTCAGTGGAGGTGAAAAATTAGCATGTGTTCAGTG
AAGGTGAAAATGGGGTTCTTCACTTTCTGGNGGATGCTCACCAACTGAACGACTTCAGACTTCACTATTTTTCCCTTATT
TCTTTTTTATGTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3435.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis