Browse Element(s) Details


OsAffx.27363.1.S1_at

Description tigr:9633.m04492
TID=OsAffx.27363.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4818011/11hypothetical protein
LOC_Os05g299601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48130NANA5+27505886..27506341hypothetical protein
LOC_Os05g48140Os.49886.1.S1_at10/115+27511055..27515513expressed protein
LOC_Os05g48150Os.3435.1.S1_at10/115+27519142..27522192transposon protein, putative, unclassified, expressed
LOC_Os05g48150Os.3435.2.S1_x_at9/115+27519142..27522192transposon protein, putative, unclassified, expressed
LOC_Os05g48160Os.51473.2.S1_x_at11/115+27522661..27524278ferredoxin, putative, expressed
LOC_Os05g48160Os.51473.1.S1_at11/115+27522661..27524278ferredoxin, putative, expressed
LOC_Os05g48170OsAffx.3852.1.S1_at2/115+27525868..27529530retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g48180OsAffx.27363.1.S1_at11/115+27530196..27531182hypothetical protein
LOC_Os05g48190OsAffx.15143.1.S1_at11/115+27533800..27536070hypothetical protein
LOC_Os05g48190OsAffx.1263.1.S1_at1/115+27533800..27536070hypothetical protein
LOC_Os05g48200Os.27638.1.S1_at11/115+27547570..27553180Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os05g48210Os.27660.1.S1_at11/115+27554824..27555702expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27363.1.S1_at--37--4132Chr05:27531058..27531082 (25 bp)
CGCAGAAGAGGAGCGTCTCGCAGAC
LOC_Os05g48180
OsAffx.27363.1.S1_at--660--2791Chr05:27531057..27531077 (21 bp)
AAGAGGAGCGTCTCGCAGACGATTA
LOC_Os05g48180
OsAffx.27363.1.S1_at--822--9491Chr05:27530608..27531067 (25 bp)
TCTCGCAGACGATTAAGTGGCGTGC
LOC_Os05g48180
OsAffx.27363.1.S1_at--630--9771Chr05:27530595..27530619 (25 bp)
TAAGTGGCGTGCAAACGGAGGACAA
LOC_Os05g48180
OsAffx.27363.1.S1_at--838--6171Chr05:27530578..27530602 (25 bp)
GAGGACAAGAAACAGTCCATCTTGG
LOC_Os05g48180
OsAffx.27363.1.S1_at--210--3453Chr11:3853177..3853214 (24 bp)
CAGTCCATCTTGGACGGAGGGCGAA
NONE
OsAffx.27363.1.S1_at--426--4092Chr05:27530268..27530292 (25 bp)
CGACGACAGCGGGAGCTTGCTGAAA
LOC_Os05g48180
OsAffx.27363.1.S1_at--1075--2151Chr05:27530263..27530287 (25 bp)
ACAGCGGGAGCTTGCTGAAAGCCAA
LOC_Os05g48180
OsAffx.27363.1.S1_at--481--10711Chr05:27530252..27530276 (25 bp)
TTGCTGAAAGCCAAGCCTAAGATTT
LOC_Os05g48180
OsAffx.27363.1.S1_at--1065--2651Chr05:27530240..27530264 (25 bp)
AAGCCTAAGATTTGTGTAAACTCAC
LOC_Os05g48180
OsAffx.27363.1.S1_at--782--8672Chr05:27530228..27530252 (25 bp)
TGTGTAAACTCACTATCTCTCTCTC
LOC_Os05g48180
Target Sequence 
CGCAGAAGAGGAGCGTCTCGCAGACGATTAAGTGGCGTGCAAACGGAGGACAAGAAACAGTCCATCTTGGACGGAGGGCG
AAGCGGGGCGACGGCGGGCGGAGCAGCGACGCGCGCGAAGCCGGCGGGGCGGCAACGGGCGGAGTGGGGCAATGGCGCAT
GCGGGCGAAGAGGGGCGACGGCGGGCGGAGTGCCGACGCGTCCGAACTCCGAAACTGGCGGGGCGACGGCGCATGCGGGC
GGAGATCGGCGCGGGGCGTACAGCGATCGACGGCGGCCTGGGGGCCCCGACTTGCTGATGCTGTTGAAGACGAACAGGAG
GGCGTATACAACTTGCTGCTGCTTGTGGTGATGGACGACGACAGCGGGAGCTTGCTGAAAGCCAAGCCTAAGATTTGTGT
AAACTCACTATCTCTCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis