Browse Element(s) Details


Os.39014.1.S1_at

Description gb:AK058732.1
DB_XREF= gi:32968750
TID=Os.39014.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.39014 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-F11, full insert sequence.
FL= gb:AK058283.1 gb:AK058732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g482208/1160S ribosomal protein L33-B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48190OsAffx.15143.1.S1_at11/115+27533800..27536070hypothetical protein
LOC_Os05g48190OsAffx.1263.1.S1_at1/115+27533800..27536070hypothetical protein
LOC_Os05g48200Os.27638.1.S1_at11/115+27547570..27553180Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os05g48210Os.27660.1.S1_at11/115+27554824..27555702expressed protein
LOC_Os05g48220Os.39014.1.S1_at8/115+27557400..2755946460S ribosomal protein L33-B, putative, expressed
LOC_Os05g48230Os.25211.1.S1_at11/115+27559844..27564573expressed protein
LOC_Os05g48240Os.8710.1.S1_at11/115+27564708..27570395Dynamin-related protein 1A, putative, expressed
LOC_Os05g48250NANA5+27574407..27575238hypothetical protein
LOC_Os05g48260OsAffx.27365.1.S1_at11/115+27577574..27581528condensation domain-containing protein, putative, expressed
LOC_Os05g48270Os.25562.1.S1_at11/115+27583058..27586077auxin-responsive protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39014.1.S1_at--912--10311Chr05:27559125..27559149 (25 bp)
TTTCTTGCCTATTCTGCAAAACTGG
LOC_Os05g48220
Os.39014.1.S1_at--130--10791Chr05:27559235..27559259 (25 bp)
TTGTTTTACTGCACAGACTATCTGG
LOC_Os05g48220
Os.39014.1.S1_at--58--5711Chr05:27559250..27559274 (25 bp)
GACTATCTGGTTGCATCTTGTACAA
LOC_Os05g48220
Os.39014.1.S1_at--908--2991Chr05:27559302..27559326 (25 bp)
AATGATATTTCCATGCGGTGTTAAC
LOC_Os05g48220
Os.39014.1.S1_at--546--4671Chr05:27559316..27559340 (25 bp)
GCGGTGTTAACTCTTTATCTGTAAT
LOC_Os05g48220
Os.39014.1.S1_at--66--491Chr05:27559332..27559356 (25 bp)
ATCTGTAATTTCTGTCTGATTGTCA
LOC_Os05g48220
Os.39014.1.S1_at--951--9011Chr05:27559371..27559395 (25 bp)
TGCAACCTTCTATAGCTTTCCATGA
LOC_Os05g48220
Os.39014.1.S1_at--766--10271Chr05:27559387..27559411 (25 bp)
TTTCCATGAACCAGATGCCCTTTGA
LOC_Os05g48220
Os.39014.1.S1_at--364--3551NONE
CATAACATCGCTATTGTGAACCCAA
NONE
Os.39014.1.S1_at--1022--491NONE
ATCGTATCAAAACTGTTGGCCTGCA
NONE
Os.39014.1.S1_at--746--10471NONE
TTACTACGTAGCAACCTTTTGTGGT
NONE
Target Sequence 
TTTCTTGCCTATTCTGCAAAACTGGTAGTTGGCATCGTGGAGGTTTTATATCAGCTAGTCACTTGGTTTACCGGCCAGAG
AAATTTAAGCGATTTTGAGGAGTTTAGCTTTTGTTTTACTGCACAGACTATCTGGTTGCATCTTGTACAACGCATGCCAA
TCACTCATTTGCGTTGAAATGATATTTCCATGCGGTGTTAACTCTTTATCTGTAATTTCTGTCTGATTGTCATGGTGACT
GTCAAATGCAACCTTCTATAGCTTTCCATGAACCAGATGCCCTTTGATCTATACAAACATAACATCGCTATTGTGAACCC
AATCATCGTATCAAAACTGTTGGCCTGCAGTATTTTAGGATAGTGATCTTGCCACTGCTAAAGTGTTGTTTTTTACTACG
TAGCAACCTTTTGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis