Browse Element(s) Details


Os.25372.1.S1_at

Description gb:AK120770.1
DB_XREF= gi:37990393
TID=Os.25372.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25372 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023008H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008H10, full insert sequence.
FL= gb:AK120770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4367011/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43619NANA5+25283734..25284146NA
LOC_Os05g43630Os.52238.1.S1_at6/115+25285221..25286730transposon protein, putative, Pong sub-class
LOC_Os05g43630OsAffx.8898.1.S1_at1/115+25285221..25286730transposon protein, putative, Pong sub-class
LOC_Os05g43640NANA5+25293730..25296862expressed protein
LOC_Os05g43650Os.27836.2.S1_at11/115+25299116..25302326expressed protein
LOC_Os05g43650Os.27836.1.A1_s_at11/115+25299116..25302326expressed protein
LOC_Os05g43650Os.27836.2.S1_s_at11/115+25299116..25302326expressed protein
LOC_Os05g43660NANA5+25304270..25304632hypothetical protein
LOC_Os05g43670Os.25372.1.S1_at11/115+25307526..25309273IQ calmodulin-binding motif family protein, expressed
LOC_Os05g43680Os.10488.1.S1_at10/115+25309661..25312841expressed protein
LOC_Os05g43690Os.9551.1.S1_at11/115+25316242..25318637expressed protein
LOC_Os05g43700OsAffx.15088.1.S1_at11/115+25319209..25321266hypothetical protein
LOC_Os05g43709NANA5+25323958..25324392NA
LOC_Os05g43720NANA5+25329588..25330037transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25372.1.S1_at--371--4731Chr05:25308034..25308058 (25 bp)
GCTGATGAGAGCTCTGAGACCTCGA
LOC_Os05g43670
Os.25372.1.S1_at--277--3031Chr05:25307933..25307957 (25 bp)
AATGCCTGTGTACATGGAGCCGAGA
LOC_Os05g43670
Os.25372.1.S1_at--950--8571Chr05:25307880..25307904 (25 bp)
TGGTTCGCATCCTGCGATGCAATTT
LOC_Os05g43670
Os.25372.1.S1_at--1044--3491Chr05:25307831..25307855 (25 bp)
CATGGTGTTGTTACATTCCTACCGT
LOC_Os05g43670
Os.25372.1.S1_at--3--10651Chr05:25307816..25307840 (25 bp)
TTCCTACCGTTGTTTTTTCACTGAT
LOC_Os05g43670
Os.25372.1.S1_at--730--8691Chr05:25307750..25307774 (25 bp)
TGTGCTGCAGCTATGATCTTTGGAA
LOC_Os05g43670
Os.25372.1.S1_at--998--5451Chr05:25307728..25307752 (25 bp)
GAACTAGGAGCCTTAGCCTGCTGTA
LOC_Os05g43670
Os.25372.1.S1_at--65--9131Chr05:25307710..25307734 (25 bp)
TGCTGTATGCTCAAATTCCCTGTGT
LOC_Os05g43670
Os.25372.1.S1_at--281--2251Chr05:25307698..25307722 (25 bp)
AAATTCCCTGTGTGTTCATTGCCTT
LOC_Os05g43670
Os.25372.1.S1_at--38--9551Chr05:25307627..25307651 (25 bp)
TCTAGCTTGGATCATTTTGTGCACT
LOC_Os05g43670
Os.25372.1.S1_at--947--3031Chr05:25307534..25307558 (25 bp)
AATCGAAATTCCCTGTGCTGCAGTT
LOC_Os05g43670
Target Sequence 
GCTGATGAGAGCTCTGAGACCTCGAGCTNTGCTGAAGCTGAGGCGAGGAAGCGCTCAAACAGTAAGAGGGGTGCTCATGC
CAAGCCCGGGCNTGCGGCGCCAATGCCTGTGTACATGGAGCCGAGAAGGATTGACGAGGAGAGGAGANAACCTGTGGTTC
GCATCCTGCGATGCAATTTGAGGTTTAGAATTATGTGGATTGTCATGGTGTTGTTACATTCCTACCGTTGTTTTTTCACT
GATATTTCCTGAGAAGAGTTTAGAACTTTTCAGATGGTAGAGTTTGTGCTGCAGCTATGATCTTTGGAACTAGGAGCCTT
AGCCTGCTGTATGCTCAAATTCCCTGTGTGTTCATTGCCTTTGTTGCTGGGTTATACAATTGCNCTGTTAGCTTTAGCAT
CGATAATTCTAGCTTGGATCATTTTGTGCACTAAANATACCCTGCTTGANGTCATCATGTGGGATCTTGGATTAATCTGT
CAATCATGTCCATTTTGATTAATCGAAATTCCCTGTGCTGCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis