Browse Element(s) Details

Os.25409.1.S1_x_at

Description

gb:CF327231
DB_XREF= gi:33802720
DB_XREF=NACL--01-K06.b1
CLONE=NACL--01-K06
TID=Os.25409.1
CNT=32
FEA=EST
TIER=Stack
STK=8
UG=Os.25409 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g45200	1/11	Pollen allergen family protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g45140	Os.1503.1.S1_at	11/11	6	+	27298917..27301107	bZIP transcription factor family protein, expressed
LOC_Os06g45150	OsAffx.15933.1.S1_s_at	11/11	6	+	27302502..27303231	Pollen allergen family protein, expressed
LOC_Os06g45160	Os.22589.1.S1_at	11/11	6	+	27305729..27306412	Pollen allergen family protein, expressed
LOC_Os06g45170	NA	NA	6	+	27308513..27313034	retrotransposon protein, putative, unclassified
LOC_Os06g45180	NA	NA	6	+	27315963..27316607	Pollen allergen family protein, expressed
LOC_Os06g45190	NA	NA	6	+	27322841..27323414	Pollen allergen family protein, expressed
LOC_Os06g45200	OsAffx.28113.1.S1_at	11/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45200	OsAffx.28113.1.S1_x_at	10/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45200	Os.50182.1.S1_at	3/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45200	Os.24196.1.A1_x_at	3/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45200	Os.25409.1.S1_x_at	1/11	6	+	27325494..27327706	Pollen allergen family protein
LOC_Os06g45210	OsAffx.28114.1.S1_x_at	10/11	6	+	27328134..27329359	Pollen allergen family protein, expressed
LOC_Os06g45220	OsAffx.28115.1.S1_at	11/11	6	+	27330981..27331851	hypothetical protein
LOC_Os06g45230	NA	NA	6	+	27332392..27333070	Pollen allergen family protein, expressed
LOC_Os06g45240	OsAffx.5111.1.S1_x_at	7/11	6	+	27334850..27338390	Leucine Rich Repeat family protein, expressed
LOC_Os06g45240	OsAffx.5111.1.S1_at	7/11	6	+	27334850..27338390	Leucine Rich Repeat family protein, expressed
LOC_Os06g45250	OsAffx.5112.1.S1_s_at	11/11	6	+	27340886..27344792	tRNA pseudouridine synthase family protein, expressed
LOC_Os06g45260	NA	NA	6	+	27350995..27354219	transposon protein, putative, unclassified

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.25409.1.S1_x_at--161--295	1	NONE	AAGGCTGACAGAGTCTATTGTATTT	NONE
Os.25409.1.S1_x_at--151--91	1	NONE	AGGCTGACAGAGTCTATTGTATTTT	NONE
Os.25409.1.S1_x_at--561--833	1	NONE	GGCTGACAGAGTCTATTGTATTTTG	NONE
Os.25409.1.S1_x_at--433--135	1	Chr06:27318752..27318776 (25 bp)	AGAGAATCCCCATGGAAGCCTTGCT	NONE
Os.25409.1.S1_x_at--464--1083	1	Chr06:27318629..27318653 (25 bp)	TTGGGACCCGACAATTACGTATATA	NONE
Os.25409.1.S1_x_at--17--865	1	Chr06:27318628..27318652 (25 bp)	TGGGACCCGACAATTACGTATATAA	NONE
Os.25409.1.S1_x_at--977--763	1	Chr06:27318627..27318651 (25 bp)	GGGACCCGACAATTACGTATATAAT	NONE
Os.25409.1.S1_x_at--910--809	1	Chr06:27318626..27318650 (25 bp)	GGACCCGACAATTACGTATATAATA	NONE
Os.25409.1.S1_x_at--1059--775	2	Chr06:27326601..27326625 (25 bp)	GGTGAACCTTCATCGAGATAGTTTC	LOC_Os06g45200
Os.25409.1.S1_x_at--989--681	1	Chr06:27318560..27318584 (25 bp)	GTTTCTTACATTTTAGTTGATTAGT	NONE
Os.25409.1.S1_x_at--1020--1053	1	Chr06:27318558..27318582 (25 bp)	TTCTTACATTTTAGTTGATTAGTTT	NONE

Target Sequence

AAGGCTGACAGAGTCTATTGTATTTTGGATGACAACCTGTGGTATTTCGAGGATCGGATAATCAGGTTGTCTATCTCGGA
TTTATTTGCGTTGGAGCAAGAGTCATTTTGGAATTCTTATCGAAGCCGGGAGTTCAGTTATATAAGTTAGTCTCATTCTA
ACTTAGTTCTCAAGTATAGATTAGATAGATGGTTTACGTCTATAGTAAAACACTAGAGTTGAGTCATTCTATAGCTTCTG
CTATAATAGTTAGCCACAATCTTGTAAATACCCTATTATTTTATGTAAGAGAATCCCCATGGAAGCCTTGCTCAAATGTA
TGCAATGAAGATCCAGATTGTTGAACCTGTATCAATTTACTGATCCAGGGCTTGATACAGTTAAACATGTCGGTTTCCGA
ATCATTAGTTTTGGGACCCGACAATTACGTATATAATATTTGTGGGAAAAAGTATAGTTGGTGAACCTTCATCGAGATAG
TTTCTTACATTTTAGTTGATTAGTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis