Browse Element(s) Details


Os.25567.1.S1_at

Description gb:AK062870.1
DB_XREF= gi:32972888
TID=Os.25567.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-C05, full insert sequence.
FL= gb:AK062870.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g467007/11SET domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46650OsAffx.23690.1.S1_at10/111+26892208..26894097hypothetical protein
LOC_Os01g46660OsAffx.12611.1.S1_at1/111+26895037..26900663transposon protein, putative, Mutator sub-class
LOC_Os01g46670OsAffx.23691.1.S1_at10/111+26903393..26904848hypothetical protein
LOC_Os01g46680OsAffx.23692.1.S1_at11/111+26908099..26908314hypothetical protein
LOC_Os01g46690OsAffx.2258.1.S1_at11/111+26910144..26912751hypothetical protein
LOC_Os01g46700Os.25567.1.S1_at7/111+26919071..26926245SET domain containing protein, expressed
LOC_Os01g46710Os.5417.3.S1_x_at11/111+26928835..26935324transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46710Os.5417.2.S1_x_at11/111+26928835..26935324transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46720Os.27759.1.S2_at11/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46720Os.27759.1.S1_at11/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46720Os.9016.1.S1_x_at2/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46730OsAffx.2259.1.S1_at11/111+26946310..26947082hypothetical protein
LOC_Os01g46740OsAffx.23693.1.S1_at10/111+26949677..26951259hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25567.1.S1_at--857--2831Chr01:26925813..26925837 (25 bp)
AAGTAGTCGTTGATGCCACAGATAA
LOC_Os01g46700
Os.25567.1.S1_at--47--2591Chr01:26925842..26925866 (25 bp)
AACGTGGCACGCTTGATTAATCATT
LOC_Os01g46700
Os.25567.1.S1_at--414--1371Chr01:26925999..26926023 (25 bp)
AGAGCCGTATTGTCCTAATCGCCAA
LOC_Os01g46700
Os.25567.1.S1_at--748--9471Chr01:26926034..26926058 (25 bp)
TCTGCCGGCGAAGAGCTAACGTATG
LOC_Os01g46700
Os.25567.1.S1_at--1134--3711Chr01:26926161..26926185 (25 bp)
CTACTTATTTGACCCTGACGAGGCT
LOC_Os01g46700
Os.25567.1.S1_at--604--6211Chr01:26926180..26926204 (25 bp)
GAGGCTGATGATCGCAAAGTTCCTT
LOC_Os01g46700
Os.25567.1.S1_at--891--10671Chr01:26926203..26926227 (25 bp)
TTGCCTCTGCCAAACGGCTAATTGT
LOC_Os01g46700
Os.25567.1.S1_at--1068--611Chr01:26926326..26926350 (25 bp)
ATGCTTTACCTTGTTCTTTGTTGCT
NONE
Os.25567.1.S1_at--822--6671Chr01:26926345..26926369 (25 bp)
GTTGCTTCCCCATTCTTTAACATAG
NONE
Os.25567.1.S1_at--198--5931Chr01:26926407..26926431 (25 bp)
GAGCTTCCATCCCTGTAAATGGCAC
NONE
Os.25567.1.S1_at--534--9871Chr01:26926444..26926468 (25 bp)
TACAGTCGTTCTTTTCTAATGCAAA
NONE
Target Sequence 
AAGTAGTCGTTGATGCCACAGATAAAGGAAACGTGGCACGCTTGATTAATCATTCTTGCACNCCAAACTGCTATGCAAGG
ATTATGAGTGTGGGGCATGACGAGAGCCGTATTGTCCTAATCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTA
TGACTACTTATTTGACCCTGACGAGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCAAACGGCTAATTGTCGTAAATTCA
TGAATTAGTTTACTGTAGATGTCAAATTGGCCATTAGTTTACTGTTCTTTCTTTCTTTCTTTCTTTTTTCTGGGTTGGCT
GGTGGTATATGCTTTACCTTGTTCTTTGTTGCTTCCCCATTCTTTAACATAGCATTTAGAAAATAAGTTTAGCTATAGCT
CAGAAGCGCGAGCTTCCATCCCTGTAAATGGCACTAATTTATCGATTACAGTCGTTCTTTTCTAATGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis